RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 KANSL3Q9P2N6 904 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 USP25Q9UHP3 1055 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 IRAK3Q9Y616 596 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 DENND4CQ5VZ89 1909 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 RHOBTB3O94955 611 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 RPN1P04843 607 aaKnown RBP10.74□□□□□ -0.69
CLN3-220ENST00000566040 THP07101 528 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 CLTAP09496 248 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 CTSAP10619 480 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 RNASELQ05823 741 aaKnown RBP10.74□□□□□ -0.69
CLN3-220ENST00000566040 ALCAMQ13740 583 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 HSP90AA2PQ14568 343 aaPredicted RBP10.74□□□□□ -0.69
CLN3-220ENST00000566040 DUSP6Q16828 381 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 CSPP1Q1MSJ5 1256 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 ZCWPW2Q504Y3 356 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 RTP2Q5QGT7 225 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 SPOUT1Q5T280 376 aaKnown RBP10.74□□□□□ -0.69
CLN3-220ENST00000566040 KIAA0319Q5VV43 1072 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 FUT10Q6P4F1 479 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 BRSK2Q8IWQ3 736 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 SLC17A8Q8NDX2 589 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 HASPINQ8TF76 798 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 SAAL1Q96ER3 474 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 BICD1Q96G01 975 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 MSLNLQ96KJ4 702 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 ACAP3Q96P50 834 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 ACCSQ96QU6 501 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 TCF25Q9BQ70 676 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 MSTO1Q9BUK6 570 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 CCDC94Q9BW85 323 aaPredicted RBP10.74□□□□□ -0.69
CLN3-220ENST00000566040 AAASQ9NRG9 546 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 AGPAT3Q9NRZ7 376 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 KCNG1Q9UIX4 513 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 CDH22Q9UJ99 828 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 UBE4BO95155 1302 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 GREB1Q4ZG55 1949 aa10.74□□□□□ -0.69
CLN3-220ENST00000566040 GOLGA8IPA6NC78 632 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 GOLGA8JA6NMD2 632 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 I3L4J1 428 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 PER2O15055 1255 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 SPTLC1O15269 473 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 ADAM12O43184 909 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 CLASP2O75122 1294 aaKnown RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 SOD2P04179 222 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 GARTP22102 1010 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 LRPAP1P30533 357 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 BRCC3P46736 316 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 OR1G1P47890 313 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 NRIP1P48552 1158 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 ALDH7A1P49419 539 aaKnown RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 AARSP49588 968 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLN3-220ENST00000566040 KCNQ1P51787 676 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 ADAM15Q13444 863 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 POSTNQ15063 836 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 TMEM132AQ24JP5 1023 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 JADE1Q6IE81 842 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 RSPO2Q6UXX9 243 aaPredicted RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 CBWD2Q8IUF1 395 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 NELFCDQ8IXH7 590 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 SMYD4Q8IYR2 804 aaPredicted RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 CEP57L1Q8IYX8 460 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 VPS52Q8N1B4 723 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 MRPL43Q8N983 215 aaKnown RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 SLC22A17Q8WUG5 538 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 IPO9Q96P70 1041 aaKnown RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 RPS6KC1Q96S38 1066 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 PYM1Q9BRP8 204 aaKnown RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 TCHPQ9BT92 498 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 UBE2ZQ9H832 354 aaPredicted RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 DMAC2Q9NW81 257 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 ADAM28Q9UKQ2 775 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 AGO2Q9UKV8 859 aaKnown RBP10.73□□□□□ -0.69
CLN3-220ENST00000566040 FAN1Q9Y2M0 1017 aa10.73□□□□□ -0.69
CLN3-220ENST00000566040 ANO9A1A5B4 782 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 TBC1D4O60343 1298 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 MYL1P05976 194 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 CD44P16070 742 aaKnown RBP10.72□□□□□ -0.69
CLN3-220ENST00000566040 AMPD3Q01432 767 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 DSG1Q02413 1049 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 KCNB1Q14721 858 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 PTPROQ16827 1216 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 C1orf220Q5T0J3 134 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 SPATA1Q5VX52 437 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 PRSS55Q6UWB4 352 aaPredicted RBP10.72□□□□□ -0.69
CLN3-220ENST00000566040 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLN3-220ENST00000566040 C12orf56Q8IXR9 622 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 HACE1Q8IYU2 909 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 EFHBQ8N7U6 833 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.72□□□□□ -0.69
CLN3-220ENST00000566040 TMEM174Q8WUU8 243 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 POMGNT1Q8WZA1 660 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 PABPC5Q96DU9 382 aaKnown RBP10.72□□□□□ -0.69
CLN3-220ENST00000566040 BORCS6Q96GS4 357 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 TMEM169Q96HH4 297 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 TIGD1Q96MW7 591 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 LRRC27Q9C0I9 530 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 PCIF1Q9H4Z3 704 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 PLEKHA5Q9HAU0 1116 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 RXFP1Q9HBX9 757 aa10.72□□□□□ -0.69
CLN3-220ENST00000566040 LMBRD1Q9NUN5 540 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms