RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.28■□□□□ 0.2
CLN3-213ENST00000565047 CLIC6Q96NY7 704 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 ACAP3Q96P50 834 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 WDR6Q9NNW5 1121 aaKnown RBP16.28■□□□□ 0.2
CLN3-213ENST00000565047 TSHZ2Q9NRE2 1034 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 TOPORSQ9NS56 1045 aaPredicted RBP16.28■□□□□ 0.2
CLN3-213ENST00000565047 TBX20Q9UMR3 447 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 HCN4Q9Y3Q4 1203 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 TBC1D4O60343 1298 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 ADRB2P07550 413 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 MYBP10242 640 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 YARSP54577 528 aaKnown RBP16.27■□□□□ 0.2
CLN3-213ENST00000565047 CREMQ03060 361 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 ELAVL2Q12926 359 aaKnown RBP16.27■□□□□ 0.2
CLN3-213ENST00000565047 STRN3Q13033 797 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 NOLC1Q14978 699 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLN3-213ENST00000565047 ZBTB6Q15916 424 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 SLC39A4Q6P5W5 647 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 PLCD3Q8N3E9 789 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 TDRD5Q8NAT2 981 aaKnown RBP16.27■□□□□ 0.2
CLN3-213ENST00000565047 KREMEN2Q8NCW0 462 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 LARP4BQ92615 738 aaKnown RBP16.27■□□□□ 0.2
CLN3-213ENST00000565047 C18orf25Q96B23 403 aaPredicted RBP16.27■□□□□ 0.2
CLN3-213ENST00000565047 USP28Q96RU2 1077 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 TCHPQ9BT92 498 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 SMOC2Q9H3U7 446 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 ZDHHC7Q9NXF8 308 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 MTRRQ9UBK8 725 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 LIMD1Q9UGP4 676 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 DPP7Q9UHL4 492 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 FBXW11Q9UKB1 542 aa16.27■□□□□ 0.2
CLN3-213ENST00000565047 MYH11P35749 1972 aa16.27■□□□□ 0.19
CLN3-213ENST00000565047 TTC26A0AVF1 554 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 CLDN3O15551 220 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 ZMYND10O75800 440 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 ASGR2P07307 311 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 BRCC3P46736 316 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 GTF2BQ00403 316 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 RAB33AQ14088 237 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 MRPL58Q14197 206 aaKnown RBP16.26■□□□□ 0.19
CLN3-213ENST00000565047 SLC39A14Q15043 492 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 PSMD5Q16401 504 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 CCDC149Q6ZUS6 474 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 CEP57Q86XR8 500 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 GLYCTKQ8IVS8 523 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 TMEM130Q8N3G9 435 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 DDX27Q96GQ7 796 aaKnown RBP16.26■□□□□ 0.19
CLN3-213ENST00000565047 STRA6Q9BX79 667 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 PRKD2Q9BZL6 878 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 ST6GALNAC4Q9H4F1 302 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 PARVGQ9HBI0 331 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 FOXD4L1Q9NU39 408 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 SLC38A7Q9NVC3 462 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 SORCS3Q9UPU3 1222 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 BACE2Q9Y5Z0 518 aa16.26■□□□□ 0.19
CLN3-213ENST00000565047 MYO10Q9HD67 2058 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 A0A087X0B3 334 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 A0A0B4J269 797 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 H0YCG3 227 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 I3L4J1 428 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 STX6O43752 255 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 TRAK2O60296 914 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 SCP2P22307 547 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 TKTP29401 623 aaKnown RBP16.25■□□□□ 0.19
CLN3-213ENST00000565047 TNFSF9P41273 254 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 NASPP49321 788 aaPredicted RBP16.25■□□□□ 0.19
CLN3-213ENST00000565047 DHX8Q14562 1220 aaKnown RBP16.25■□□□□ 0.19
CLN3-213ENST00000565047 ZBTB41Q5SVQ8 909 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 OTOP3Q7RTS5 596 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 UBALD2Q8IYN6 164 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 MYCT1Q8N699 235 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 PBXIP1Q96AQ6 731 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 DNAJC19Q96DA6 116 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 MFSD14AQ96MC6 490 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 ZSCAN16Q9H4T2 348 aaPredicted RBP16.25■□□□□ 0.19
CLN3-213ENST00000565047 PLEKHA5Q9HAU0 1116 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 ANKFY1Q9P2R3 1169 aa16.25■□□□□ 0.19
CLN3-213ENST00000565047 CLUHO75153 1309 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 MYMKA6NI61 221 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 PODXLO00592 558 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 PPP1R37O75864 691 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 CLTAP09496 248 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 CXCL8P10145 99 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 HARSP12081 509 aaKnown RBP16.24■□□□□ 0.19
CLN3-213ENST00000565047 NMT1P30419 496 aaKnown RBP16.24■□□□□ 0.19
CLN3-213ENST00000565047 RPL9P32969 192 aaKnown RBP16.24■□□□□ 0.19
CLN3-213ENST00000565047 OR1D2P34982 312 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 SLC8B1Q6J4K2 584 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 PDXDC1Q6P996 788 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 MAP4K3Q8IVH8 894 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 SMG7Q92540 1137 aaKnown RBP16.24■□□□□ 0.19
CLN3-213ENST00000565047 KCNH6Q9H252 994 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 EPS15L1Q9UBC2 864 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 STYXL1Q9Y6J8 313 aa16.24■□□□□ 0.19
CLN3-213ENST00000565047 PDCD11Q14690 1871 aaKnown RBP16.24■□□□□ 0.19
CLN3-213ENST00000565047 FAM13AO94988 1023 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 PDGFBP01127 241 aaPredicted RBP16.23■□□□□ 0.19
CLN3-213ENST00000565047 POU2F2P09086 479 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 LRPAP1P30533 357 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 HOXA9P31269 272 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms