RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 WDR6Q9NNW5 1121 aaKnown RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 DPP7Q9UHL4 492 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 FBXW11Q9UKB1 542 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 CLIC4Q9Y696 253 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 CLUHO75153 1309 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 ANK1P16157 1881 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 I3L4J1 428 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 TOM1L1O75674 476 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 BMP15O95972 392 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 KCNE1P15382 129 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 SYT1P21579 422 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 LONP1P36776 959 aaKnown RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 BRCC3P46736 316 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 SMTNP53814 917 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 YARSP54577 528 aaKnown RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 VCPP55072 806 aaKnown RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 ELAVL2Q12926 359 aaKnown RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 STRN3Q13033 797 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 MCM6Q14566 821 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 SLC10A6Q3KNW5 377 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 SPECC1Q5M775 1068 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 ELMSAN1Q6PJG2 1045 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 CYP26C1Q6V0L0 522 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 ZPBP2Q6X784 338 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 USP49Q70CQ1 688 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 OTOP3Q7RTS5 596 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 GPBP1Q86WP2 473 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 UBALD2Q8IYN6 164 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 TMEM130Q8N3G9 435 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 KCNN1Q92952 543 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 C18orf25Q96B23 403 aaPredicted RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 ACSF2Q96CM8 615 aaPredicted RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 CALML4Q96GE6 196 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 UROC1Q96N76 676 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 ACAP3Q96P50 834 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 MYADMQ96S97 322 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 PRKD2Q9BZL6 878 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 TOPORSQ9NS56 1045 aaPredicted RBP11.85□□□□□ -0.51
VPS39-208ENST00000564994 ZDHHC7Q9NXF8 308 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 CNTN3Q9P232 1028 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 ANKFY1Q9P2R3 1169 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 KCNG1Q9UIX4 513 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 ODF2LQ9ULJ1 636 aa11.85□□□□□ -0.51
VPS39-208ENST00000564994 MYO15AQ9UKN7 3530 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 ZMYND10O75800 440 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 PDCP20941 246 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 TKTP29401 623 aaKnown RBP11.84□□□□□ -0.51
VPS39-208ENST00000564994 HOXD11P31277 338 aaPredicted RBP11.84□□□□□ -0.51
VPS39-208ENST00000564994 OR1D2P34982 312 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 ZNF131P52739 623 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 MCL1Q07820 350 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 NOLC1Q14978 699 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS39-208ENST00000564994 HAUS6Q7Z4H7 955 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 SUGP1Q8IWZ8 645 aaKnown RBP11.84□□□□□ -0.51
VPS39-208ENST00000564994 PRSS33Q8NF86 280 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 RAD54LQ92698 747 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 DDX27Q96GQ7 796 aaKnown RBP11.84□□□□□ -0.51
VPS39-208ENST00000564994 EPSTI1Q96J88 318 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 FIZ1Q96SL8 496 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 CCSER1Q9C0I3 900 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 KCNH6Q9H252 994 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 KCNK12Q9HB15 430 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 LARSQ9P2J5 1176 aaKnown RBP11.84□□□□□ -0.51
VPS39-208ENST00000564994 MTRRQ9UBK8 725 aa11.84□□□□□ -0.51
VPS39-208ENST00000564994 FBXO2Q9UK22 296 aaPredicted RBP11.84□□□□□ -0.51
VPS39-208ENST00000564994 DMDP11532 3685 aa11.83□□□□□ -0.51
VPS39-208ENST00000564994 PODXLO00592 558 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 CLDN3O15551 220 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 C8AP07357 584 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 CXCL8P10145 99 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 MARCKSP29966 332 aaPredicted RBP11.83□□□□□ -0.52
VPS39-208ENST00000564994 TNFSF9P41273 254 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 NHLH1Q02575 133 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 RAB33AQ14088 237 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 ZBTB41Q5SVQ8 909 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 MYCT1Q8N699 235 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 RSAD2Q8WXG1 361 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 INTS4Q96HW7 963 aaKnown RBP11.83□□□□□ -0.52
VPS39-208ENST00000564994 PIDD1Q9HB75 910 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 FOXD4L1Q9NU39 408 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 SLC38A7Q9NVC3 462 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 TUBGCP4Q9UGJ1 667 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 TBX20Q9UMR3 447 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 MTMR6Q9Y217 621 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 BACE2Q9Y5Z0 518 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 CDY1Q9Y6F8 540 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 USP34Q70CQ2 3546 aa11.83□□□□□ -0.52
VPS39-208ENST00000564994 H0YCG3 227 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 K7ENM7 598 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 TRAPPC3O43617 180 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 TRAK2O60296 914 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 FAM189A1O60320 539 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 FAM13AO94988 1023 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 PIGRP01833 764 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 AVPR2P30518 371 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 GBP2P32456 591 aaPredicted RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 NTHL1P78549 312 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 CEBPZQ03701 1054 aaKnown RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 SPAG1Q07617 926 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms