RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 VWA3AA6NCI4 1184 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 ANHXE9PGG2 379 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 SLC16A4O15374 487 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 ADAM12O43184 909 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 TRAPPC3O43617 180 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 MYBP10242 640 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 LAMP2P13473 410 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 IGFBP6P24592 240 aaPredicted RBP18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 GBP2P32456 591 aaPredicted RBP18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 ZPBP2Q6X784 338 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 C3orf58Q8NDZ4 430 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 TMEM161BQ8NDZ6 487 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 SNX27Q96L92 541 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 TBC1D32Q96NH3 1257 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 ACAP3Q96P50 834 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 CNTN3Q9P232 1028 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 WNT16Q9UBV4 365 aa18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.87■□□□□ 0.61
VPS9D1-203ENST00000563798 VWA8A3KMH1 1905 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 SFI1A8K8P3 1242 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 TOM1L1O75674 476 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 MAPTP10636 758 aaKnown RBP18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 NPR3P17342 541 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 SMTNP53814 917 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 SOX4Q06945 474 aaPredicted RBP18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 LIN9Q5TKA1 542 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 ANKS3Q6ZW76 656 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 SLC44A3Q8N4M1 653 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 ZMAT2Q96NC0 199 aaKnown RBP18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 PHOX2BQ99453 314 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 SMC3Q9UQE7 1217 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 CACNA1HO95180 2353 aa18.86■□□□□ 0.61
VPS9D1-203ENST00000563798 DOCK8Q8NF50 2099 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 MEFVO15553 781 aaPredicted RBP18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 BMP15O95972 392 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 C8AP07357 584 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 PLA2G4BP0C869 781 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 SCP2P22307 547 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 RPL9P32969 192 aaKnown RBP18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 STRN3Q13033 797 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 LARP1BQ659C4 914 aaKnown RBP18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 CWF19L1Q69YN2 538 aaKnown RBP18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 TCHPQ9BT92 498 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 GOLGA2P5Q9HBQ8 144 aa18.85■□□□□ 0.61
VPS9D1-203ENST00000563798 H0YCG3 227 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 FSHRP23945 695 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 TKTP29401 623 aaKnown RBP18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 OR1D2P34982 312 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 NCKAP1LP55160 1127 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 OSTNP61366 133 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 MCL1Q07820 350 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 ZRSR1Q15695 479 aaKnown RBP18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 ARSHQ5FYA8 562 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 PPM1LQ5SGD2 360 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 AXDND1Q5T1B0 1012 aaPredicted RBP18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 SLC8B1Q6J4K2 584 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 RSPO2Q6UXX9 243 aaPredicted RBP18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 BRAPQ7Z569 592 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 RSAD2Q8WXG1 361 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 CDK5RAP3Q96JB5 506 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 ZBTB45Q96K62 511 aaPredicted RBP18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 MFSD1Q9H3U5 465 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 LARSQ9P2J5 1176 aaKnown RBP18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 ODF2LQ9ULJ1 636 aa18.84■□□□□ 0.61
VPS9D1-203ENST00000563798 TRIP11Q15643 1979 aa18.83■□□□□ 0.61
VPS9D1-203ENST00000563798 PODXLO00592 558 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 SYN3O14994 580 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 NARSO43776 548 aaKnown RBP18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 TBC1D4O60343 1298 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 XYLBO75191 536 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 SRFP11831 508 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 AOC1P19801 751 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 BRCC3P46736 316 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 HTR4Q13639 388 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 MRPL58Q14197 206 aaKnown RBP18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 NOLC1Q14978 699 aaKnown RBP eCLIP18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 SLC10A6Q3KNW5 377 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 GRASPQ7Z6J2 395 aaPredicted RBP18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 PLEKHA5Q9HAU0 1116 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 CDH7Q9ULB5 785 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 CDY1Q9Y6F8 540 aa18.83■□□□□ 0.6
VPS9D1-203ENST00000563798 PROB1E7EW31 1015 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 ABLIM3O94929 683 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 LONP1P36776 959 aaKnown RBP18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 ZNF131P52739 623 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 RAD51AP2Q09MP3 1159 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 CUL4AQ13619 759 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 GET4Q7L5D6 327 aaPredicted RBP18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 SIX5Q8N196 739 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 ZNF461Q8TAF7 563 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 SLC7A14Q8TBB6 771 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 PLIN2Q99541 437 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 RTP3Q9BQQ7 232 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 SLC2A4RGQ9NR83 387 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 FBXL21Q9UKT6 434 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 KCNH3Q9ULD8 1083 aa18.82■□□□□ 0.6
VPS9D1-203ENST00000563798 H0Y858 1186 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 I3L4J1 428 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 CLDN3O15551 220 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms