RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 KCNE1P15382 129 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 SCNN1GP51170 649 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 TMCO2Q7Z6W1 182 aaPredicted RBP17.97■□□□□ 0.47
VPS4A-202ENST00000562754 WDR49Q8IV35 697 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 CD302Q8IX05 232 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 KIF12Q96FN5 646 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 VPS16Q9H269 839 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 MMRN2Q9H8L6 949 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 UBN1Q9NPG3 1134 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 INTS13Q9NVM9 706 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 LRFN2Q9ULH4 789 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 INPP5FQ9Y2H2 1132 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 PCDHB7Q9Y5E2 793 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 SMIM28A0A1B0GU29 152 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 LRRC10BA6NIK2 292 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 H0YGN5 161 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 TNNI1P19237 187 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 KCNJ6P48051 423 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 GCLMP48507 274 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 GUCY2FP51841 1108 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 KCNH2Q12809 1159 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 TMEM132DQ14C87 1099 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 ZBTB6Q15916 424 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 UVSSAQ2YD98 709 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 CBWD6Q4V339 395 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 VWA3BQ502W6 1294 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 CBWD3Q5JTY5 395 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 CBWD5Q5RIA9 395 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 GLB1LQ6UWU2 654 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 ANKRD20A12PQ8NF67 263 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 PPP1R10Q96QC0 940 aaKnown RBP17.96■□□□□ 0.47
VPS4A-202ENST00000562754 RPS6KC1Q96S38 1066 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 MTMR12Q9C0I1 747 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 TMEM117Q9H0C3 514 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 DERAQ9Y315 318 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 C2CD2Q9Y426 696 aa17.96■□□□□ 0.47
VPS4A-202ENST00000562754 PDE4DIPQ5VU43 2346 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 GOLGA6L3A6NEY3 463 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 LGALS16A8MUM7 142 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 UPP2O95045 317 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 AFPP02771 609 aaKnown RBP17.95■□□□□ 0.46
VPS4A-202ENST00000562754 FMO5P49326 533 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 TFAMQ00059 246 aaKnown RBP17.95■□□□□ 0.46
VPS4A-202ENST00000562754 SOX4Q06945 474 aaPredicted RBP17.95■□□□□ 0.46
VPS4A-202ENST00000562754 NAB2Q15742 525 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 C9orf50Q5SZB4 431 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 RASIP1Q5U651 963 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 TDRD10Q5VZ19 366 aaKnown RBP17.95■□□□□ 0.46
VPS4A-202ENST00000562754 SCARA3Q6AZY7 606 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 SARM1Q6SZW1 724 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 C15orf39Q6ZRI6 1047 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 USP37Q86T82 979 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 TOP1MTQ969P6 601 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 C18orf25Q96B23 403 aaPredicted RBP17.95■□□□□ 0.46
VPS4A-202ENST00000562754 NAP1L5Q96NT1 182 aaPredicted RBP17.95■□□□□ 0.46
VPS4A-202ENST00000562754 CASD1Q96PB1 797 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 NDST4Q9H3R1 872 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 IFNKQ9P0W0 207 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 TUBGCP4Q9UGJ1 667 aa17.95■□□□□ 0.46
VPS4A-202ENST00000562754 A0A1B0GTH6 734 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 B4GALT3O60512 393 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 SERPINC1P01008 464 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 POMCP01189 267 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 C4BPAP04003 597 aaKnown RBP17.94■□□□□ 0.46
VPS4A-202ENST00000562754 TMEM191BP0C7N4 346 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 GTF2H1P32780 548 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 MXI1P50539 228 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 MYL7Q01449 175 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 GSE1Q14687 1217 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 ZACNQ401N2 412 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 NOMO2Q5JPE7 1267 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 FAM117BQ6P1L5 589 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 SV2AQ7L0J3 742 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 NT5DC4Q86YG4 428 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 TSPAN18Q96SJ8 248 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 GRPEL1Q9HAV7 217 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 RC3H2Q9HBD1 1191 aaKnown RBP17.94■□□□□ 0.46
VPS4A-202ENST00000562754 TMEM8AQ9HCN3 771 aa17.94■□□□□ 0.46
VPS4A-202ENST00000562754 RNF216Q9NWF9 866 aaPredicted RBP17.94■□□□□ 0.46
VPS4A-202ENST00000562754 PES1O00541 588 aaKnown RBP17.93■□□□□ 0.46
VPS4A-202ENST00000562754 TEX33O43247 280 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 HOXA2O43364 376 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 STX10O60499 249 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 DGKIO75912 1065 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 VNN1O95497 513 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 TNNC2P02585 160 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 GRIK3Q13003 919 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 DUOXA2Q1HG44 320 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 C1orf127Q8N9H9 656 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 CXorf38Q8TB03 319 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 ANKRD36BP1Q96IX9 119 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 GDF15Q99988 308 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 XPO4Q9C0E2 1151 aaKnown RBP17.93■□□□□ 0.46
VPS4A-202ENST00000562754 GOLGA2P5Q9HBQ8 144 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 RTN4Q9NQC3 1192 aaKnown RBP17.93■□□□□ 0.46
VPS4A-202ENST00000562754 TBC1D13Q9NVG8 400 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 HCSTQ9UBK5 93 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 SIX4Q9UIU6 781 aa17.93■□□□□ 0.46
VPS4A-202ENST00000562754 UBQLN1Q9UMX0 589 aaKnown RBP17.93■□□□□ 0.46
VPS4A-202ENST00000562754 TBKBP1A7MCY6 615 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms