RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 FXR2P51116 673 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLN3-208ENST00000561505 PFKPQ01813 784 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 ECM1Q16610 540 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 SPECC1Q5M775 1068 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 C3orf58Q8NDZ4 430 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 DEPTORQ8TB45 409 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 KIFAP3Q92845 792 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 RMDN1Q96DB5 314 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 DDX27Q96GQ7 796 aaKnown RBP18.09■□□□□ 0.49
CLN3-208ENST00000561505 FOXP1Q9H334 677 aaPredicted RBP18.09■□□□□ 0.49
CLN3-208ENST00000561505 GDE1Q9NZC3 331 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 GPR179Q6PRD1 2367 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 SMIM28A0A1B0GU29 152 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 ARHGEF35A5YM69 484 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 B3GAT3O94766 335 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 MICAL2O94851 1124 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 RFX1P22670 979 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 GRM5P41594 1212 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 CLCNKBP51801 687 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 FZD5Q13467 585 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 SNW1Q13573 536 aaKnown RBP18.08■□□□□ 0.48
CLN3-208ENST00000561505 TRIM29Q14134 588 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 MRPL58Q14197 206 aaKnown RBP18.08■□□□□ 0.48
CLN3-208ENST00000561505 ATF7IP2Q5U623 682 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 MAMSTRQ6ZN01 415 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 ANKS3Q6ZW76 656 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 ST13P5Q8NFI4 369 aaPredicted RBP18.08■□□□□ 0.48
CLN3-208ENST00000561505 ZNF461Q8TAF7 563 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 ERMNQ8TAM6 284 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 RUBCNQ92622 972 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 NELL2Q99435 816 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 LTB4R2Q9NPC1 389 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 HCFC1R1Q9NWW0 138 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 DLL3Q9NYJ7 618 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 CDY1Q9Y6F8 540 aa18.08■□□□□ 0.48
CLN3-208ENST00000561505 CEP250Q9BV73 2442 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 ABLIM1O14639 778 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 TRAPPC3O43617 180 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 TKTP29401 623 aaKnown RBP18.07■□□□□ 0.48
CLN3-208ENST00000561505 RPS9P46781 194 aaKnown RBP18.07■□□□□ 0.48
CLN3-208ENST00000561505 TRAPPC10P48553 1259 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 SOX4Q06945 474 aaPredicted RBP18.07■□□□□ 0.48
CLN3-208ENST00000561505 PDIA5Q14554 519 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 PABPC1LQ4VXU2 614 aaKnown RBP18.07■□□□□ 0.48
CLN3-208ENST00000561505 ZNF687Q8N1G0 1237 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 ZBTB44Q8NCP5 570 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 ACO2Q99798 780 aaKnown RBP18.07■□□□□ 0.48
CLN3-208ENST00000561505 TMEM134Q9H6X4 195 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 GDAQ9Y2T3 454 aa18.07■□□□□ 0.48
CLN3-208ENST00000561505 MTF2Q9Y483 593 aaPredicted RBP18.07■□□□□ 0.48
CLN3-208ENST00000561505 COL4A3Q01955 1670 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 KCNE1P15382 129 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 PROZP22891 400 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 NEK4P51957 841 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 PRSS36Q5K4E3 855 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 HAUS3Q68CZ6 603 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 TAS1R3Q7RTX0 852 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 TCEAL8Q8IYN2 117 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 DAW1Q8N136 415 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 IGSF22Q8N9C0 903 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 FBXO18Q8NFZ0 1043 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 KCNG4Q8TDN1 519 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 IFT74Q96LB3 600 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 LLPHQ9BRT6 129 aaKnown RBP18.06■□□□□ 0.48
CLN3-208ENST00000561505 NTPCRQ9BSD7 190 aaKnown RBP18.06■□□□□ 0.48
CLN3-208ENST00000561505 KIFC3Q9BVG8 833 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 BCO2Q9BYV7 579 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 ARHGAP28Q9P2N2 729 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 PATJQ8NI35 1801 aa18.06■□□□□ 0.48
CLN3-208ENST00000561505 K7ERI5 159 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 SYN3O14994 580 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 SPTLC1O15269 473 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 LILRB5O75023 590 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 RHOP08100 348 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 ATF2P15336 505 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 BRCC3P46736 316 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 ROR1Q01973 937 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 SAFBQ15424 915 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLN3-208ENST00000561505 ZNF174Q15697 407 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 SLC5A9Q2M3M2 681 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 GLRA4Q5JXX5 417 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 APBB1IPQ7Z5R6 666 aaPredicted RBP18.05■□□□□ 0.48
CLN3-208ENST00000561505 ELSPBP1Q96BH3 223 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 ZMAT2Q96NC0 199 aaKnown RBP18.05■□□□□ 0.48
CLN3-208ENST00000561505 PLA2G2FQ9BZM2 168 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 CDT1Q9H211 546 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 BHMT2Q9H2M3 363 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 GOLGA2P5Q9HBQ8 144 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 MRPS23Q9Y3D9 190 aaKnown RBP18.05■□□□□ 0.48
CLN3-208ENST00000561505 PCDHGA2Q9Y5H1 932 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 MIA3Q5JRA6 1907 aa18.05■□□□□ 0.48
CLN3-208ENST00000561505 PHLPP2Q6ZVD8 1323 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 FAM170BA6NMN3 283 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 MEFVO15553 781 aaPredicted RBP18.04■□□□□ 0.48
CLN3-208ENST00000561505 PTPN2P17706 415 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 FCARP24071 287 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 NPTX2P47972 431 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 PUM1Q14671 1186 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLN3-208ENST00000561505 CEP120Q8N960 986 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 DNASE1L2Q92874 299 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms