RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 SPTLC3Q9NUV7 552 aa7.12□□□□□ -1.27
LRRC28-220ENST00000561253 GGA3Q9NZ52 723 aa7.12□□□□□ -1.27
LRRC28-220ENST00000561253 ZNF70Q9UC06 446 aaPredicted RBP7.12□□□□□ -1.27
LRRC28-220ENST00000561253 MAST2Q6P0Q8 1798 aa7.12□□□□□ -1.27
LRRC28-220ENST00000561253 ZNF532Q9HCE3 1301 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 GPR39O43194 453 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 PEX10O60683 326 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 IDH1O75874 414 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 MAP4K4O95819 1239 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 FAHP16930 419 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 SLC9A1P19634 815 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 MAP3K12Q12852 859 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 SLC9C2Q5TAH2 1124 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 CREB3L3Q68CJ9 461 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 NAA16Q6N069 864 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 CC2D1AQ6P1N0 951 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 ZC3H18Q86VM9 953 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 SPATS2Q86XZ4 545 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 DZIP1Q86YF9 867 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 MIB1Q86YT6 1006 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 RPUSD2Q8IZ73 545 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 MAGEB6Q8N7X4 407 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 EVI5LQ96CN4 794 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 GLIS2Q9BZE0 524 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 PUS7LQ9H0K6 701 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 IL25Q9H293 177 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 TDRD3Q9H7E2 651 aaKnown RBP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 EMC7Q9NPA0 242 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 ACSS2Q9NR19 701 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 TOMM22Q9NS69 142 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 HOMER2Q9NSB8 354 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.11□□□□□ -1.27
LRRC28-220ENST00000561253 RAI14Q9P0K7 980 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 HDAC9Q9UKV0 1011 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 SPO11Q9Y5K1 396 aa7.11□□□□□ -1.27
LRRC28-220ENST00000561253 RPAP1Q9BWH6 1393 aaPredicted RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 MYH2Q9UKX2 1941 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 CLRN2A0PK11 232 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 ALG1L2C9J202 215 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 ADM5C9JUS6 153 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 DVL2O14641 736 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 ASGR2P07307 311 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 HMGB1P09429 215 aaKnown RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 NCAM1P13591 858 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 BTDP43251 543 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 CACNB3P54284 484 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 DYNLL1P63167 89 aaKnown RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 FSTL1Q12841 308 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 SEC23AQ15436 765 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 TARBP2Q15633 366 aaKnown RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 LHFPL2Q6ZUX7 228 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 FAM83AQ86UY5 434 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 ZFPM1Q8IX07 1006 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 CNTROBQ8N137 903 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 ELF4Q99607 663 aaPredicted RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 NGRNQ9NPE2 291 aaKnown RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 PLA2G2DQ9UNK4 145 aa7.1□□□□□ -1.27
LRRC28-220ENST00000561253 SCAF8Q9UPN6 1271 aaKnown RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 COL2A1P02458 1487 aaPredicted RBP7.1□□□□□ -1.27
LRRC28-220ENST00000561253 POLR2AP24928 1970 aaKnown RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 A0A0D9SFI3 127 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 ACOT7O00154 380 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 RNF113AO15541 343 aaKnown RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 ULK1O75385 1050 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 C4BPAP04003 597 aaKnown RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 CYP17A1P05093 508 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 LDHCP07864 332 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 PFKLP17858 780 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 STAT5AP42229 794 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 RGS3P49796 1198 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 NKX3-2P78367 333 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 GSTO1P78417 241 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 BMP2KLQ5H9B9 411 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 CST9Q5W186 159 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 IQSEC1Q6DN90 963 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 CD300LDQ6UXZ3 194 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 LCORLQ8N3X6 602 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 MIGA1Q8NAN2 632 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 SH3RF3Q8TEJ3 882 aaPredicted RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 FAM227BQ96M60 508 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 STRBPQ96SI9 672 aaKnown RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 SEC62Q99442 399 aaKnown RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 MCOLN1Q9GZU1 580 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 RNF38Q9H0F5 515 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 DEFB129Q9H1M3 183 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 KCNK12Q9HB15 430 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 AATFQ9NY61 560 aaKnown RBP eCLIP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 SLC5A4Q9NY91 659 aa7.09□□□□□ -1.27
LRRC28-220ENST00000561253 DDX60LQ5H9U9 1706 aaKnown RBP7.09□□□□□ -1.27
LRRC28-220ENST00000561253 ECM29Q5VYK3 1845 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 FLT1P17948 1338 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 TEX51A0A1B0GUA7 166 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 MYOCOSA0A1B0GUC4 107 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 ENTPD3O75355 529 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 LRG1P02750 347 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 ZFYP08048 801 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 SDHAP31040 664 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 GUCY2FP51841 1108 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms