RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 GRIK3Q13003 919 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 SMAD4Q13485 552 aaKnown RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 PTPN14Q15678 1187 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 ZC2HC1CQ53FD0 456 aaPredicted RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 PDE12Q6L8Q7 609 aaKnown RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 SV2BQ7L1I2 683 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 HAUS6Q7Z4H7 955 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 FEZF2Q8TBJ5 459 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 NOC3LQ8WTT2 800 aaKnown RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 RPGRIP1Q96KN7 1286 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 PHOX2BQ99453 314 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 TIPINQ9BVW5 301 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 CCDC94Q9BW85 323 aaPredicted RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 GPR62Q9BZJ7 368 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 CCSER1Q9C0I3 900 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 IKZF4Q9H2S9 585 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 PARVGQ9HBI0 331 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 LARSQ9P2J5 1176 aaKnown RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 TNFSF13BQ9Y275 285 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 RBM19Q9Y4C8 960 aaKnown RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 USP15Q9Y4E8 981 aaPredicted RBP13.15□□□□□ -0.3
TPM1-216ENST00000558910 HCFC2Q9Y5Z7 792 aa13.15□□□□□ -0.3
TPM1-216ENST00000558910 MYMKA6NI61 221 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 I3L4J1 428 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 TRAK2O60296 914 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 KIF4AO95239 1232 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 CFHP08603 1231 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 SRGAP2BP0DMP2 458 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 DNM1Q05193 864 aaKnown RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 DSC1Q08554 894 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 TUSC3Q13454 348 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 HSP90AA2PQ14568 343 aaPredicted RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 ANKRD54Q6NXT1 300 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 FUT10Q6P4F1 479 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 PRSS55Q6UWB4 352 aaPredicted RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 MPZL3Q6UWV2 235 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 APBB1IPQ7Z5R6 666 aaPredicted RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 SFR1Q86XK3 245 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 PALB2Q86YC2 1186 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 FAM178BQ8IXR5 827 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 GJD3Q8N144 294 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 LINC00301Q8NCQ3 95 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 SPIRE2Q8WWL2 714 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 DHX58Q96C10 678 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 MSLNLQ96KJ4 702 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 ACAP3Q96P50 834 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 KLHL5Q96PQ7 755 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 CDCA3Q99618 268 aaPredicted RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 MRPL17Q9NRX2 175 aaKnown RBP13.14□□□□□ -0.31
TPM1-216ENST00000558910 ADAM28Q9UKQ2 775 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 FAM50BQ9Y247 325 aa13.14□□□□□ -0.31
TPM1-216ENST00000558910 MUC3AQ02505 3323 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 FAM86C2PA6NEL3 165 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 TISP43B9A030 160 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 HNRNPDLO14979 420 aaKnown RBP13.13□□□□□ -0.31
TPM1-216ENST00000558910 SOD2P04179 222 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 CNPP09543 421 aaKnown RBP13.13□□□□□ -0.31
TPM1-216ENST00000558910 ME1P48163 572 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 NASPP49321 788 aaPredicted RBP13.13□□□□□ -0.31
TPM1-216ENST00000558910 GLUD2P49448 558 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 CLCNKBP51801 687 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 NCKAP1LP55160 1127 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 NOLC1Q14978 699 aaKnown RBP eCLIP13.13□□□□□ -0.31
TPM1-216ENST00000558910 COL19A1Q14993 1142 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 PUS10Q3MIT2 529 aaKnown RBP13.13□□□□□ -0.31
TPM1-216ENST00000558910 TMC5Q6UXY8 1006 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 C18orf25Q96B23 403 aaPredicted RBP13.13□□□□□ -0.31
TPM1-216ENST00000558910 HERC2P3Q9BVR0 1158 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 PRR14Q9BWN1 585 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 EMILIN2Q9BXX0 1053 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 HAPLN2Q9GZV7 340 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 EPHX3Q9H6B9 360 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 C17orf75Q9HAS0 396 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 KCND2Q9NZV8 630 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 ODF2LQ9ULJ1 636 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 TBX20Q9UMR3 447 aa13.13□□□□□ -0.31
TPM1-216ENST00000558910 NCOR1O75376 2440 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 SMIM28A0A1B0GU29 152 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 CLDN3O15551 220 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 CXCL8P10145 99 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 MCF2P10911 925 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 TNFSF9P41273 254 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 GRM5P41594 1212 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 BRCC3P46736 316 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 GUCY2FP51841 1108 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 ZBTB41Q5SVQ8 909 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 FAM171A1Q5VUB5 890 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 SYCE2Q6PIF2 218 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 CCDC73Q6ZRK6 1079 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 RSPH1Q8WYR4 309 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 CASP10Q92851 521 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 HPS3Q969F9 1004 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 ZMAT2Q96NC0 199 aaKnown RBP13.12□□□□□ -0.31
TPM1-216ENST00000558910 MRPL44Q9H9J2 332 aaKnown RBP13.12□□□□□ -0.31
TPM1-216ENST00000558910 PTPRHQ9HD43 1115 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 PCDHB3Q9Y5E6 796 aa13.12□□□□□ -0.31
TPM1-216ENST00000558910 TDRD15B5MCY1 1934 aaKnown RBP13.11□□□□□ -0.31
TPM1-216ENST00000558910 MYH11P35749 1972 aa13.11□□□□□ -0.31
TPM1-216ENST00000558910 ANKRD63C9JTQ0 380 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms