RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 C15orf39Q6ZRI6 1047 aa11.39□□□□□ -0.59
CUX1-217ENST00000558836 ANKRD13AQ8IZ07 590 aa11.39□□□□□ -0.59
CUX1-217ENST00000558836 NLRP4Q96MN2 994 aa11.39□□□□□ -0.59
CUX1-217ENST00000558836 SPATA33Q96N06 139 aa11.39□□□□□ -0.59
CUX1-217ENST00000558836 NIFKQ9BYG3 293 aaKnown RBP11.39□□□□□ -0.59
CUX1-217ENST00000558836 NUB1Q9Y5A7 615 aa11.39□□□□□ -0.59
CUX1-217ENST00000558836 SBF1O95248 1867 aa11.39□□□□□ -0.59
CUX1-217ENST00000558836 GZMAP12544 262 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 CD58P19256 250 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 TNFRSF8P28908 595 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 KCNJ1P48048 391 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 ATP1A2P50993 1020 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 KCTD2Q14681 263 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 PSMD6Q15008 389 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 TARBP2Q15633 366 aaKnown RBP11.38□□□□□ -0.59
CUX1-217ENST00000558836 MAATS1Q7Z4T9 603 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 CEP120Q8N960 986 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 CALR3Q96L12 384 aaKnown RBP11.38□□□□□ -0.59
CUX1-217ENST00000558836 ZSWIM1Q9BR11 485 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 CARD9Q9H257 536 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 PTPN22Q9Y2R2 807 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 PCDHB4Q9Y5E5 795 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 EVPLQ92817 2033 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 A0A0B4J269 797 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 B4GALT5O43286 388 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 ADCY3O60266 1144 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 ACAD10Q6JQN1 1059 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 IQCKQ8N0W5 287 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 MMP19Q99542 508 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 GPR20Q99678 358 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 ANAPC7Q9UJX3 599 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 SNX24Q9Y343 169 aa11.38□□□□□ -0.59
CUX1-217ENST00000558836 CCDC188H7C350 402 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 O00370 1275 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 SCP2P22307 547 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 GTF2H1P32780 548 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 PEX5P50542 639 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 CLCN3P51790 818 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 GCNT1Q02742 428 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 LAMTOR4Q0VGL1 99 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 ZSCAN26Q16670 478 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 UBL4BQ8N7F7 174 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 CCDC26Q8TAB7 109 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 FAM76AQ8TAV0 307 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 PPP1R13LQ8WUF5 828 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 C11orf70Q9BRQ4 267 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 MTMR12Q9C0I1 747 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 SPON1Q9HCB6 807 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 LRRC4CQ9HCJ2 640 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 PLAAQ9Y263 795 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 OTOFQ9HC10 1997 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 ZBTB42B2RXF5 422 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 MAFO75444 373 aaPredicted RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 TXNP10599 105 aaKnown RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 HSD17B3P37058 310 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 DR1Q01658 176 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 POU5F1Q01860 360 aaKnown RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 CLEC16AQ2KHT3 1053 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 FAM160B1Q5W0V3 765 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 UBLCP1Q8WVY7 318 aaPredicted RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 RUBCNQ92622 972 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 UPF1Q92900 1129 aaKnown RBP eCLIP11.37□□□□□ -0.59
CUX1-217ENST00000558836 AGTPBP1Q9UPW5 1226 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 UTP11Q9Y3A2 253 aaKnown RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 SPDYE5A6NIY4 337 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 H0YCG3 227 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 INO80B-WBP1J3KQ70 363 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 ATP8B3O60423 1300 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 MSCO60682 206 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 CYP1A2P05177 515 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 GJA5P36382 358 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 GJC1P36383 396 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 NOP14P78316 857 aaKnown RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 NNTQ13423 1086 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 CUL2Q13617 745 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 MOGSQ13724 837 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 NCOA4Q13772 614 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 UAP1Q16222 522 aaPredicted RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 CEP85LQ5SZL2 805 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 C11orf63Q6NUN7 778 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 TTC27Q6P3X3 843 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 SCARA5Q6ZMJ2 495 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 PRELID2Q8N945 189 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 MAGOHBQ96A72 148 aaKnown RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 VTI1AQ96AJ9 217 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 FAM118BQ9BPY3 351 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 SYT17Q9BSW7 474 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 INO80BQ9C086 356 aaPredicted RBP11.37□□□□□ -0.59
CUX1-217ENST00000558836 RNPEPQ9H4A4 650 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 CNTNAP2Q9UHC6 1331 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 GTF3C4Q9UKN8 822 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 DAAM1Q9Y4D1 1078 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 STYXL1Q9Y6J8 313 aa11.37□□□□□ -0.59
CUX1-217ENST00000558836 POTEJP0CG39 1038 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 UNGP13051 313 aaPredicted RBP11.36□□□□□ -0.59
CUX1-217ENST00000558836 MAPK4P31152 587 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 PLTPP55058 493 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 PTENP60484 403 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 TFAMQ00059 246 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms