RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ADAM12O43184 909 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 CD2BP2O95400 341 aaKnown RBP16.03■□□□□ 0.16
SHMT2-235ENST00000557740 PLS3P13797 630 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 RFX1P22670 979 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 FSHRP23945 695 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 TKTP29401 623 aaKnown RBP16.03■□□□□ 0.16
SHMT2-235ENST00000557740 HOXA9P31269 272 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 CLCN5P51795 746 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 UPP1Q16831 310 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 ANKS3Q6ZW76 656 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 SLC7A14Q8TBB6 771 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 SPIRE2Q8WWL2 714 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 NXPE3Q969Y0 559 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 DDX27Q96GQ7 796 aaKnown RBP16.03■□□□□ 0.16
SHMT2-235ENST00000557740 ACAP3Q96P50 834 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 PLIN2Q99541 437 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 KCND2Q9NZV8 630 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 MTRRQ9UBK8 725 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 KCNG1Q9UIX4 513 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 POLIQ9UNA4 740 aa16.03■□□□□ 0.16
SHMT2-235ENST00000557740 H0Y858 1186 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 I3L4J1 428 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 PODXLO00592 558 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 CCL16O15467 120 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 NARSO43776 548 aaKnown RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 CFHP08603 1231 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 PLA2G4BP0C869 781 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 LAMP2P13473 410 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 PROZP22891 400 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 OR1D2P34982 312 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 SOX4Q06945 474 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 RAB33AQ14088 237 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 NOLC1Q14978 699 aaKnown RBP eCLIP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 CWF19L1Q69YN2 538 aaKnown RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 GRASPQ7Z6J2 395 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 SYT2Q8N9I0 419 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 C3orf58Q8NDZ4 430 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 PNMA5Q96PV4 448 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 CDY1Q9Y6F8 540 aa16.02■□□□□ 0.16
SHMT2-235ENST00000557740 ZFP37Q9Y6Q3 630 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-235ENST00000557740 ABLIM1O14639 778 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 TOM1L1O75674 476 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 SRFP11831 508 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 KCNE1P15382 129 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 MATR3P43243 847 aaKnown RBP eCLIP16.01■□□□□ 0.15
SHMT2-235ENST00000557740 BRCC3P46736 316 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 TMEM119Q4V9L6 283 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 XKR4Q5GH76 650 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 AXDND1Q5T1B0 1012 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-235ENST00000557740 LARP1BQ659C4 914 aaKnown RBP16.01■□□□□ 0.15
SHMT2-235ENST00000557740 ALKAL1Q6UXT8 129 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 SLC44A3Q8N4M1 653 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 TMEM161BQ8NDZ6 487 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 RASSF8Q8NHQ8 419 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 BICD1Q96G01 975 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 AK8Q96MA6 479 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 RTP3Q9BQQ7 232 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 CNTN3Q9P232 1028 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 WNT16Q9UBV4 365 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 NUB1Q9Y5A7 615 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 BACE2Q9Y5Z0 518 aa16.01■□□□□ 0.15
SHMT2-235ENST00000557740 H0YCG3 227 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 STK25O00506 426 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 SLC26A4O43511 780 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 BMP15O95972 392 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 POU2F2P09086 479 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 MAPTP10636 758 aaKnown RBP16■□□□□ 0.15
SHMT2-235ENST00000557740 AOC1P19801 751 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 IGFBP6P24592 240 aaPredicted RBP16■□□□□ 0.15
SHMT2-235ENST00000557740 SLC12A3P55017 1021 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 CACNB1Q02641 598 aaPredicted RBP16■□□□□ 0.15
SHMT2-235ENST00000557740 HTR4Q13639 388 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 UVSSAQ2YD98 709 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 ZPBP2Q6X784 338 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 CALML4Q96GE6 196 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 ZMAT2Q96NC0 199 aaKnown RBP16■□□□□ 0.15
SHMT2-235ENST00000557740 NTPCRQ9BSD7 190 aaKnown RBP16■□□□□ 0.15
SHMT2-235ENST00000557740 LARSQ9P2J5 1176 aaKnown RBP16■□□□□ 0.15
SHMT2-235ENST00000557740 CDH7Q9ULB5 785 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 NUMBLQ9Y6R0 609 aa16■□□□□ 0.15
SHMT2-235ENST00000557740 ANHXE9PGG2 379 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 SYN3O14994 580 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 NPR3P17342 541 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 RPL9P32969 192 aaKnown RBP15.99■□□□□ 0.15
SHMT2-235ENST00000557740 UBA7P41226 1012 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 NTHL1P78549 312 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 CD300LGQ6UXG3 332 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 RTL10Q7L3V2 364 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 BRAPQ7Z569 592 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 GPBP1Q86WP2 473 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 C18orf25Q96B23 403 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-235ENST00000557740 ZBTB45Q96K62 511 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-235ENST00000557740 TBC1D32Q96NH3 1257 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 ODF2LQ9ULJ1 636 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 CA14Q9ULX7 337 aa15.99■□□□□ 0.15
SHMT2-235ENST00000557740 NPHP3-ACAD11A0A0J9YXS1 232 aa15.98■□□□□ 0.15
SHMT2-235ENST00000557740 H7C4K7 107 aa15.98■□□□□ 0.15
SHMT2-235ENST00000557740 CLDN3O15551 220 aa15.98■□□□□ 0.15
SHMT2-235ENST00000557740 GFRA3O60609 400 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms