RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 TRAPPC3O43617 180 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 GLULP15104 373 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 U2AF2P26368 475 aaKnown RBP eCLIP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 TKTP29401 623 aaKnown RBP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 GRM5P41594 1212 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 BRCC3P46736 316 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 NPTX2P47972 431 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 TOB1P50616 345 aaPredicted RBP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 FOXK2Q01167 660 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 SOX4Q06945 474 aaPredicted RBP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 ANKS3Q6ZW76 656 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 MTSS1LQ765P7 747 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 APBB1IPQ7Z5R6 666 aaPredicted RBP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 C1orf210Q8IVY1 113 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 DAW1Q8N136 415 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 CEP120Q8N960 986 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 PJA1Q8NG27 643 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 DDX27Q96GQ7 796 aaKnown RBP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 SHDQ96IW2 340 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 DDX23Q9BUQ8 820 aaKnown RBP17.52■□□□□ 0.4
SCFD1-224ENST00000557713 FOXQ1Q9C009 403 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 TMEM134Q9H6X4 195 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 KCNH3Q9ULD8 1083 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 STK24Q9Y6E0 443 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 R4GN57 208 aa17.52■□□□□ 0.4
SCFD1-224ENST00000557713 RIF1Q5UIP0 2472 aaKnown RBP17.52■□□□□ 0.39
SCFD1-224ENST00000557713 E9PMD0 336 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 I3L4J1 428 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 LMNAP02545 664 aaKnown RBP17.51■□□□□ 0.39
SCFD1-224ENST00000557713 PEX3P56589 373 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 HMGN5P82970 282 aaKnown RBP17.51■□□□□ 0.39
SCFD1-224ENST00000557713 PTGDRQ13258 359 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 SNW1Q13573 536 aaKnown RBP17.51■□□□□ 0.39
SCFD1-224ENST00000557713 PABPC1LQ4VXU2 614 aaKnown RBP17.51■□□□□ 0.39
SCFD1-224ENST00000557713 SLC44A4Q53GD3 710 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 TAS1R3Q7RTX0 852 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 SNX29Q8TEQ0 813 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 ZSCAN31Q96LW9 406 aaPredicted RBP17.51■□□□□ 0.39
SCFD1-224ENST00000557713 CDT1Q9H211 546 aa17.51■□□□□ 0.39
SCFD1-224ENST00000557713 NOL7Q9UMY1 257 aaKnown RBP17.51■□□□□ 0.39
SCFD1-224ENST00000557713 PHLPP2Q6ZVD8 1323 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 KANSL1LA0AUZ9 987 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 CCDC169A6NNP5 214 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 LRRN2O75325 713 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 ABLIM3O94929 683 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 SP9P0CG40 484 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 YARSP54577 528 aaKnown RBP17.5■□□□□ 0.39
SCFD1-224ENST00000557713 GNL2Q13823 731 aaKnown RBP17.5■□□□□ 0.39
SCFD1-224ENST00000557713 IL17AQ16552 155 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 SLC8B1Q6J4K2 584 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 POTEHQ6S545 545 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 NPAS3Q8IXF0 933 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 ZNF461Q8TAF7 563 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 ZMAT2Q96NC0 199 aaKnown RBP17.5■□□□□ 0.39
SCFD1-224ENST00000557713 CCDC94Q9BW85 323 aaPredicted RBP17.5■□□□□ 0.39
SCFD1-224ENST00000557713 TOPORSQ9NS56 1045 aaPredicted RBP17.5■□□□□ 0.39
SCFD1-224ENST00000557713 ARHGAP28Q9P2N2 729 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 DNM3Q9UQ16 869 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 PCDHB6Q9Y5E3 794 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 SPTBN4Q9H254 2564 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 NOTCH4Q99466 2003 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 FAM186AA6NE01 2351 aa17.5■□□□□ 0.39
SCFD1-224ENST00000557713 MYH15Q9Y2K3 1946 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 ARHGEF37A1IGU5 675 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 ABLIM1O14639 778 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 TBC1D4O60343 1298 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 HIP1RO75146 1068 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 KCNE1P15382 129 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 PROZP22891 400 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 OSTNP61366 133 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 PRKCQQ04759 706 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 MAPK7Q13164 816 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 MLF2Q15773 248 aaPredicted RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 ZNF568Q3ZCX4 644 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 ERICH6BQ5W0A0 696 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 C1orf186Q6ZWK4 172 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 MAML2Q8IZL2 1156 aaPredicted RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 FAM184AQ8NB25 1140 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 KCNG4Q8TDN1 519 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 KXD1Q9BQD3 176 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 NTPCRQ9BSD7 190 aaKnown RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 TARS2Q9BW92 718 aaKnown RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 MRPL4Q9BYD3 311 aaKnown RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 RAB34Q9BZG1 259 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 AVENQ9NQS1 362 aaPredicted RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 SLC38A7Q9NVC3 462 aa17.49■□□□□ 0.39
SCFD1-224ENST00000557713 RBM19Q9Y4C8 960 aaKnown RBP17.49■□□□□ 0.39
SCFD1-224ENST00000557713 COL4A3Q01955 1670 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 PP2D1A8MPX8 630 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 MEFVO15553 781 aaPredicted RBP17.48■□□□□ 0.39
SCFD1-224ENST00000557713 MCF2P10911 925 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 PTPN2P17706 415 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 ID4P47928 161 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 ROR1Q01973 937 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 MRPL58Q14197 206 aaKnown RBP17.48■□□□□ 0.39
SCFD1-224ENST00000557713 SLC5A9Q2M3M2 681 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 VARS2Q5ST30 1063 aaKnown RBP17.48■□□□□ 0.39
SCFD1-224ENST00000557713 KRT79Q5XKE5 535 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 RINT1Q6NUQ1 792 aa17.48■□□□□ 0.39
SCFD1-224ENST00000557713 KCNK18Q7Z418 384 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms