RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MKRN4PQ13434 485 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 BIRC3Q13489 604 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 PRPF4BQ13523 1007 aaKnown RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TCEAL1Q15170 157 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ATF7IP2Q5U623 682 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 SAPCD2Q86UD0 394 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ZNF410Q86VK4 478 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 LRRC71Q8N4P6 559 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 LINC01465Q8N7H1 131 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 HELQQ8TDG4 1101 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 FAXDC2Q96IV6 333 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TRPM7Q96QT4 1865 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 C16orf70Q9BSU1 422 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ABCB6Q9NP58 842 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TFR2Q9UP52 801 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TNFSF13BQ9Y275 285 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 SRRM3A6NNA2 597 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-229ENST00000557348 ENC1O14682 589 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 LRRN2O75325 713 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 C4BPAP04003 597 aaKnown RBP13.58□□□□□ -0.24
SHMT2-229ENST00000557348 PROZP22891 400 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 GSCP56915 257 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-229ENST00000557348 PPFIA1Q13136 1202 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 CLUL1Q15846 466 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 TMEM132AQ24JP5 1023 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 CCDC181Q5TID7 509 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 CRELD2Q6UXH1 353 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-229ENST00000557348 LRRC31Q6UY01 552 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 GLYCTKQ8IVS8 523 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 SMC1BQ8NDV3 1235 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 TAF4BQ92750 862 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 HHIPL1Q96JK4 782 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 NLRP4Q96MN2 994 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 RNPEPQ9H4A4 650 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 CPA4Q9UI42 421 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 LCMT1Q9UIC8 334 aa13.58□□□□□ -0.24
SHMT2-229ENST00000557348 CNTNAP2Q9UHC6 1331 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 GRID2IPA4D2P6 1211 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 INO80B-WBP1J3KQ70 363 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 RTN2O75298 545 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 PALMO75781 387 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 HLA-DRAP01903 254 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 SMPD1P17405 629 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 ACOT2P49753 483 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 HADHBP55084 474 aaKnown RBP13.57□□□□□ -0.24
SHMT2-229ENST00000557348 DRP2Q13474 957 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 ZNF568Q3ZCX4 644 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 IFNL1Q8IU54 200 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 LNX1Q8TBB1 728 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-229ENST00000557348 EPS8L1Q8TE68 723 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 SEMA4DQ92854 862 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 OSBPL9Q96SU4 736 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 POP1Q99575 1024 aaKnown RBP13.57□□□□□ -0.24
SHMT2-229ENST00000557348 APBA2Q99767 749 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 INO80BQ9C086 356 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-229ENST00000557348 ISCUQ9H1K1 167 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 PUF60Q9UHX1 559 aaKnown RBP13.57□□□□□ -0.24
SHMT2-229ENST00000557348 FAN1Q9Y2M0 1017 aa13.57□□□□□ -0.24
SHMT2-229ENST00000557348 A6NJR5 290 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 IGF2BP3O00425 579 aaKnown RBP eCLIP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 BUB1O43683 1085 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 PHACTR2O75167 634 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 MCF2P10911 925 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 CPT1AP50416 773 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 CLCN3P51790 818 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 GALCP54803 685 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 YWHAEP62258 255 aaKnown RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 MBTD1Q05BQ5 628 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 CFAP221Q4G0U5 840 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 MEI1Q5TIA1 1274 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 MTHFD1LQ6UB35 978 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 C17orf99Q6UX52 265 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TRIM72Q6ZMU5 477 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 NPLOC4Q8TAT6 608 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TRIM11Q96F44 468 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 ZBTB45Q96K62 511 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 KREMEN1Q96MU8 473 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 PTPRHQ9HD43 1115 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TOPORSQ9NS56 1045 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 SEPT11Q9NVA2 429 aaKnown RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 CPSF3Q9UKF6 684 aaKnown RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 AKT3Q9Y243 479 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 PCDHB2Q9Y5E7 798 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TLL2Q9Y6L7 1015 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 NRCAMQ92823 1304 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 EBAG9O00559 213 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 FAM189A1O60320 539 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 B4GALT4O60513 344 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 APLP1P51693 650 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 CDR2Q01850 454 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 GRIK4Q16099 956 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 DUOXA2Q1HG44 320 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TDRD10Q5VZ19 366 aaKnown RBP13.56□□□□□ -0.24
SHMT2-229ENST00000557348 B4GALNT4Q76KP1 1039 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 GPIHBP1Q8IV16 184 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TPCN2Q8NHX9 752 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 USP6NLQ92738 828 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 PBKQ96KB5 322 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 KATNAL1Q9BW62 490 aa13.56□□□□□ -0.24
SHMT2-229ENST00000557348 TLR10Q9BXR5 811 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms