RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	TMCO5B	A8MYB1	307 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956		B2RBV5	119 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	KLF4	O43474	513 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SHOX2	O60902	331 aa	Predicted RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	N4BP1	O75113	896 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	PPFIA2	O75334	1257 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	KIAA0754	O94854	1291 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	RHOXF2B	P0C7M4	288 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FGFR1	P11362	822 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FDPS	P14324	419 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	RPL13	P26373	211 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	HOXC9	P31274	260 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	HNRNPH1	P31943	449 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	MC3R	P41968	323 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ARHGAP25	P42331	645 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	PLCD1	P51178	756 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	MNAT1	P51948	309 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	USP14	P54578	494 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ADK	P55263	362 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	VSNL1	P62760	191 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	KIF23	Q02241	960 aa	Predicted RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	DLX2	Q07687	328 aa	Predicted RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	DDR1	Q08345	913 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SPIRE1	Q08AE8	756 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	GOLGA8F	Q08AF8	430 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	GOLGA8DP	Q0D2H9	430 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	PNOC	Q13519	176 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	RAB33A	Q14088	237 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ICAM4	Q14773	271 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	POSTN	Q15063	836 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SAFB	Q15424	915 aa	Known RBP eCLIP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SURF1	Q15526	300 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	IMMT	Q16891	758 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	AMOT	Q4VCS5	1084 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FAM26F	Q5R3K3	315 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SLC35F1	Q5T1Q4	408 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SOGA3	Q5TF21	947 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SPATA1	Q5VX52	437 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ALS2CL	Q60I27	953 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ISM2	Q6H9L7	571 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	CYP26C1	Q6V0L0	522 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	NSMF	Q6X4W1	530 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	CCDC50	Q8IVM0	306 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	CCDC103	Q8IW40	242 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SLC35F6	Q8N357	371 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	OTUD6B	Q8N6M0	293 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	IGSF22	Q8N9C0	903 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	KBTBD3	Q8NAB2	608 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	NGDN	Q8NEJ9	315 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	MICAL1	Q8TDZ2	1067 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	WASF1	Q92558	559 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SECISBP2L	Q93073	1101 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZBTB9	Q96C00	473 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	CLIC6	Q96NY7	704 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	PNKP	Q96T60	521 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	RHOXF2	Q9BQY4	288 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	CRACR2A	Q9BSW2	395 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	AARSD1	Q9BTE6	412 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	IER2	Q9BTL4	223 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	LRRC2	Q9BYS8	371 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	HSD3B7	Q9H2F3	369 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	BICC1	Q9H694	974 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	BCAS3	Q9H6U6	928 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZSWIM4	Q9H7M6	989 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FAM204A	Q9H8W3	233 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	GPR108	Q9NPR9	543 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	LZTFL1	Q9NQ48	299 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	A1CF	Q9NQ94	594 aa	Known RBP	3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	TOMM22	Q9NS69	142 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FBLN5	Q9UBX5	448 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	MAN1B1	Q9UKM7	699 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	SIT1	Q9Y3P8	196 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	NFE2L3	Q9Y4A8	694 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FAM169A	Q9Y6X4	670 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	FPGT-TNNI3K	V9GXZ4	949 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	A2ML1	A8K2U0	1454 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	NRK	Q7Z2Y5	1582 aa		3.2	□□□□□ -1.9
SLIRP-208	ENST00000556956	ITIH6	Q6UXX5	1313 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	ATXN2	Q99700	1313 aa	Known RBP	3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	CDHR2	Q9BYE9	1310 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	USP6	P35125	1406 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	NCAPD2	Q15021	1401 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	ANKAR	Q7Z5J8	1434 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	PTPRU	Q92729	1446 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	NRXN3	Q9Y4C0	1643 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	ITSN1	Q15811	1721 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	KLF18	A0A0U1RQI7	1052 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	GOLGA6C	A6NDK9	693 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	LRRIQ3	A6PVS8	624 aa	Predicted RBP	3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	GOLGA8B	A8MQT2	603 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	EXOC5	O00471	708 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZNF213	O14771	459 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	RNF113A	O15541	343 aa	Known RBP	3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	TBX1	O43435	398 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	PRC1	O43663	620 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	HSF2BP	O75031	334 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	MFAP3L	O75121	409 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	PRPF6	O94906	941 aa	Known RBP	3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	CLSTN1	O94985	981 aa		3.19	□□□□□ -1.9
SLIRP-208	ENST00000556956	RAPGEF3	O95398	923 aa		3.19	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms