RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 AGO4Q9HCK5 861 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 JPH1Q9HDC5 661 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 ARSEP51690 589 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 MARSP56192 900 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 NOP14P78316 857 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 SKOR1P84550 965 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 CXCL9Q07325 125 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 TTC27Q6P3X3 843 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 EPM2AIP1Q7L775 607 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 SPATS2Q86XZ4 545 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 EFCC1Q9HA90 598 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 GINM1Q9NU53 330 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 ZC3H4Q9UPT8 1303 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 WNT10BO00744 389 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 STAM2O75886 525 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 HSPA6P17066 643 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 BRD2P25440 801 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 CASC4Q6P4E1 433 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 ZC3H18Q86VM9 953 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RFX6Q8HWS3 928 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 GRK7Q8WTQ7 553 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RBM15Q96T37 977 aaKnown RBP eCLIP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 PDCD2LQ9BRP1 358 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 PITPNM3Q9BZ71 974 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RNF19AQ9NV58 838 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 FBXO40Q9UH90 709 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 INTUQ9ULD6 942 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 ASTN2O75129 1339 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 COL14A1Q05707 1796 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 MYO1EQ12965 1108 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RFX8Q6ZV50 586 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 PARD3BQ8TEW8 1205 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 OSBPL8Q9BZF1 889 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 SLC9A2Q9UBY0 812 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RIPK3Q9Y572 518 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 KIAA0391O15091 583 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 ETS1P14921 441 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 VCAM1P19320 739 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 CHKAP35790 457 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 JAK3P52333 1124 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 DNAJC3Q13217 504 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RHPN2Q8IUC4 686 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 TIAM2Q8IVF5 1701 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RBBP8NLQ8NC74 664 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 TTC16Q8NEE8 873 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 NSUN6Q8TEA1 469 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 PPP1R13LQ8WUF5 828 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 RUBCNQ92622 972 aa12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 N4BP2L2Q92802 583 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-211ENST00000556726 H7C0C1 242 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 O00370 1275 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 HOXA7P31268 230 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 ATP5OP48047 213 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 NLRP11P59045 1033 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 CDR2Q01850 454 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 PDIA2Q13087 525 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 MIS18BP1Q6P0N0 1132 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 SESTD1Q86VW0 696 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 MICALL2Q8IY33 904 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 C7orf31Q8N865 590 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 LRRN4Q8WUT4 740 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 DEFB129Q9H1M3 183 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 TMEM8AQ9HCN3 771 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 MAD1L1Q9Y6D9 718 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 GTPBP10A4D1E9 387 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 DDX3YO15523 660 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 RPS6KA5O75582 802 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 MRPS9P82933 396 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 ERICH1Q86X53 443 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 C1orf131Q8NDD1 294 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 LRRC8CQ8TDW0 803 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 SNF8Q96H20 258 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 WNK4Q96J92 1243 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 MYOZ2Q9NPC6 264 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 GTF3C4Q9UKN8 822 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 TELO2Q9Y4R8 837 aa12.91□□□□□ -0.34
CCDC88C-211ENST00000556726 LOC102724159A0A0B4J2E5 919 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 DKC1O60832 514 aaKnown RBP eCLIP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PSMA2P25787 234 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 GTF2H1P32780 548 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 JAM2P57087 298 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 FMO1Q01740 532 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PGM5Q15124 567 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PWP2Q15269 919 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 TRIM50Q86XT4 487 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 SULF1Q8IWU6 871 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PARP9Q8IXQ6 854 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 RNF149Q8NC42 400 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 MICAL1Q8TDZ2 1067 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 SMC6Q96SB8 1091 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 MOV10L1Q9BXT6 1211 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 HEY1Q9Y5J3 304 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PFASO15067 1338 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 BANF1O75531 89 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 EGFRP00533 1210 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 CDC25CP30307 473 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 BPIFB4P59827 614 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ACTR2P61160 394 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms