RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	AGRP	O00253	132 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ZBTB43	O43298	467 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	PLA2G6	O60733	806 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	PAPLN	O95428	1278 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	SGPL1	O95470	568 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CFB	P00751	764 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ICAM1	P05362	532 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ITGAV	P06756	1048 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	HMGB1	P09429	215 aa	Known RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CALM1	P0DP23	149 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CALM2	P0DP24	149 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CALM3	P0DP25	149 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	MYCL	P12524	364 aa	Predicted RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	HSPA4	P34932	840 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	KIR2DL1	P43626	348 aa	Predicted RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	KIR2DL2	P43627	348 aa	Predicted RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CCT2	P78371	535 aa	Known RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	STK3	Q13188	491 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	GRB10	Q13322	594 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	BAAT	Q14032	418 aa	Predicted RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	GRM4	Q14833	912 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	KCNMB1	Q16558	191 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	QRICH1	Q2TAL8	776 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	TKFC	Q3LXA3	575 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	GTF2IRD2B	Q6EKJ0	949 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	OGFOD2	Q6N063	350 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	RNF207	Q6ZRF8	634 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CEP128	Q6ZU80	1094 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	GTF2IRD2	Q86UP8	949 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	MICU3	Q86XE3	530 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ZSWIM9	Q86XI8	627 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	FANCB	Q8NB91	859 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ABHD4	Q8TB40	342 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	TBC1D5	Q92609	795 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	RRP36	Q96EU6	259 aa	Known RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ASIC4	Q96FT7	647 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	MAML3	Q96JK9	1138 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ZNF333	Q96JL9	665 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	PIGS	Q96S52	555 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	MCMBP	Q9BTE3	642 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	5.35	□□□□□ -1.55	1e-11	■■■■□ 25.2
ATXN3-238	ENST00000556288	EPN3	Q9H201	632 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	JMJD4	Q9H9V9	463 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	LY9	Q9HBG7	655 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	PDRG1	Q9NUG6	133 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ERVK13-1	Q9NX77	482 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	SIRPG	Q9P1W8	387 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	TNFRSF10D	Q9UBN6	386 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	SEC63	Q9UGP8	760 aa	Known RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	MAD2L2	Q9UI95	211 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ZHX1	Q9UKY1	873 aa	Predicted RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	CNPY2	Q9Y2B0	182 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	MRPL11	Q9Y3B7	192 aa	Known RBP	5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	PCDHA1	Q9Y5I3	950 aa		5.35	□□□□□ -1.55
ATXN3-238	ENST00000556288	ZNF536	O15090	1300 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	C2orf71	A6NGG8	1288 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	GOLGA8A	A7E2F4	631 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	GOLGA8B	A8MQT2	603 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288		B4DLN1	442 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	SH2B2	O14492	632 aa	Predicted RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	AURKA	O14965	403 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	EIF5B	O60841	1220 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	GJB1	P08034	283 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	RPS6KB1	P23443	525 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	HOXA13	P31271	388 aa	Predicted RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	NT5C2	P49902	561 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	SEPHS1	P49903	392 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	GNAQ	P50148	359 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	MRPL12	P52815	198 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	OAZ1	P54368	228 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	RTP1	P59025	263 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	EXOSC10	Q01780	885 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	AKAP17A	Q02040	695 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	GRB14	Q14449	540 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	NR0B2	Q15466	257 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	SLC10A6	Q3KNW5	377 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	GJC2	Q5T442	439 aa	Predicted RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	ARHGEF16	Q5VV41	709 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	BTNL9	Q6UXG8	535 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	RUFY3	Q7L099	469 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	JAML	Q86YT9	394 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	TRIM59	Q8IWR1	403 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	ABRA	Q8N0Z2	381 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	LILRA2	Q8N149	483 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	REPS2	Q8NFH8	660 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	U2AF1L4	Q8WU68	220 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	FAM168A	Q92567	244 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	USP6NL	Q92738	828 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	CUL5	Q93034	780 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	FERMT2	Q96AC1	680 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	MRGPRX3	Q96LB0	322 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	MPHOSPH6	Q99547	160 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	AMN	Q9BXJ7	453 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	UPF3B	Q9BZI7	483 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	RANBP17	Q9H2T7	1088 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	SP110	Q9HB58	689 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	A1CF	Q9NQ94	594 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	ADD3	Q9UEY8	706 aa	Known RBP	5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	BACE2	Q9Y5Z0	518 aa		5.34	□□□□□ -1.55
ATXN3-238	ENST00000556288	DDX49	Q9Y6V7	483 aa	Known RBP	5.34	□□□□□ -1.55

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