RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 KIAA0319Q5VV43 1072 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 CES5AQ6NT32 575 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 ACCSQ96QU6 501 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 MSTO1Q9BUK6 570 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 RXFP1Q9HBX9 757 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 USP15Q9Y4E8 981 aaPredicted RBP22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 A0A0B4J269 797 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 SPDYE4A6NLX3 237 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 C2CD2LO14523 706 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 PPP1R37O75864 691 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 B3GAT3O94766 335 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 GCNT3O95395 438 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 CNPP09543 421 aaKnown RBP22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 POU5F1Q01860 360 aaKnown RBP22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 L1TD1Q5T7N2 865 aaKnown RBP22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 CNNM4Q6P4Q7 775 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 NECTIN4Q96NY8 510 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 PAAF1Q9BRP4 392 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 TTPALQ9BTX7 342 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 GPR62Q9BZJ7 368 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 TRIM9Q9C026 710 aa22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 RPF1Q9H9Y2 349 aaKnown RBP22.5■■□□□ 1.19
CCDC88C-210ENST00000555995 SSTR3P32745 418 aaPredicted RBP22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 UPP1Q16831 310 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 ZC2HC1CQ53FD0 456 aaPredicted RBP22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 CEP57L1Q8IYX8 460 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 GJD3Q8N144 294 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 SLC22A17Q8WUG5 538 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 NECAB3Q96P71 396 aaPredicted RBP22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 TMEM206Q9H813 350 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 SFXN1Q9H9B4 322 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 USP25Q9UHP3 1055 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 ZDHHC9Q9Y397 364 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 STYXL1Q9Y6J8 313 aa22.49■■□□□ 1.19
CCDC88C-210ENST00000555995 VCANP13611 3396 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 F8W810 466 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 POLR2DO15514 142 aaKnown RBP22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 GLUD1P00367 558 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 CXCL8P10145 99 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 CLCN4P51793 760 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 CLCNKBP51801 687 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 ASIC1P78348 528 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 NUCB2P80303 420 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 RBM10P98175 930 aaKnown RBP22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 ZP2Q05996 745 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 SLC10A6Q3KNW5 377 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 FAM171A1Q5VUB5 890 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 ADALQ6DHV7 355 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 SYCE2Q6PIF2 218 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 TAS1R1Q7RTX1 841 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 HASPINQ8TF76 798 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 HDAC7Q8WUI4 952 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 LEO1Q8WVC0 666 aaPredicted RBP22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 RIN2Q8WYP3 895 aaPredicted RBP22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 PIK3R5Q8WYR1 880 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 SUSD6Q92537 303 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 FBXL18Q96ME1 805 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 RIPOR3Q96MK2 946 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 STRA6Q9BX79 667 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 CXCL16Q9H2A7 254 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 KCNH3Q9ULD8 1083 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 UBQLN1Q9UMX0 589 aaKnown RBP22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 TCHHQ07283 1943 aa22.48■■□□□ 1.19
CCDC88C-210ENST00000555995 TTC26A0AVF1 554 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 PODXLO00592 558 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 TEX28O15482 410 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 CYP3A5P20815 502 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 MTHFRP42898 656 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 CBX2Q14781 532 aaPredicted RBP22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 SYCP3Q8IZU3 236 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 POMGNT1Q8WZA1 660 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 RABGGTAQ92696 567 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 ZMAT2Q96NC0 199 aaKnown RBP22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 C7orf25Q9BPX7 421 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 PHF7Q9BWX1 381 aaPredicted RBP22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 HAPLN2Q9GZV7 340 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 S1PR5Q9H228 398 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 ADAM7Q9H2U9 754 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 CACNG4Q9UBN1 327 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 AGO2Q9UKV8 859 aaKnown RBP22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 NUB1Q9Y5A7 615 aa22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 MTCL1Q9Y4B5 1905 aaKnown RBP22.47■■□□□ 1.19
CCDC88C-210ENST00000555995 PLXNA3P51805 1871 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 KIAA0391O15091 583 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 FAM189A1O60320 539 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 EPCAMP16422 314 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 CMA1P23946 247 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 PSMD5Q16401 504 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 SEZ6Q53EL9 994 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 SLC39A4Q6P5W5 647 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 KIF12Q96FN5 646 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 PLEKHA4Q9H4M7 779 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 GOLGA2P5Q9HBQ8 144 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 TBC1D7Q9P0N9 293 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 CPSF3Q9UKF6 684 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 DERAQ9Y315 318 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 VWA8A3KMH1 1905 aa22.46■■□□□ 1.19
CCDC88C-210ENST00000555995 C19orf67A6NJJ6 358 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 EIF3DO15371 548 aaKnown RBP eCLIP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms