RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 KIAA1841Q6NSI8 718 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 KANK3Q6NY19 840 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 RIN2Q8WYP3 895 aaPredicted RBP22.39■■□□□ 1.17
VTI1B-205ENST00000555543 DHX58Q96C10 678 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 FGFBP2Q9BYJ0 223 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 SEL1LQ9UBV2 794 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 RCOR1Q9UKL0 485 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 CFAP45Q9UL16 551 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 PLXNA3P51805 1871 aa22.39■■□□□ 1.17
VTI1B-205ENST00000555543 VWA8A3KMH1 1905 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 A0A0B4J269 797 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 TMEM189-UBE2V1I3L0A0 370 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 GAP43P17677 238 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 CASP5P51878 434 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 KCNA1Q09470 495 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 FAM171A1Q5VUB5 890 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 PRSS55Q6UWB4 352 aaPredicted RBP22.38■■□□□ 1.17
VTI1B-205ENST00000555543 PPFIBP1Q86W92 1011 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 TMEM130Q8N3G9 435 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 UROC1Q96N76 676 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 MRPL44Q9H9J2 332 aaKnown RBP22.38■■□□□ 1.17
VTI1B-205ENST00000555543 DZANK1Q9NVP4 752 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 KBTBD4Q9NVX7 518 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 SSX2IPQ9Y2D8 614 aa22.38■■□□□ 1.17
VTI1B-205ENST00000555543 OGTO15294 1046 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 B3GAT3O94766 335 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 CLTAP09496 248 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 RPL17P18621 184 aaKnown RBP22.37■■□□□ 1.17
VTI1B-205ENST00000555543 CBX2Q14781 532 aaPredicted RBP22.37■■□□□ 1.17
VTI1B-205ENST00000555543 ENOX2Q16206 610 aaKnown RBP22.37■■□□□ 1.17
VTI1B-205ENST00000555543 TPRNQ4KMQ1 711 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 HERC4Q5GLZ8 1057 aaPredicted RBP22.37■■□□□ 1.17
VTI1B-205ENST00000555543 RARS2Q5T160 578 aaKnown RBP22.37■■□□□ 1.17
VTI1B-205ENST00000555543 RESP18Q5W5W9 173 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 FBXL18Q96ME1 805 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 TNMDQ9H2S6 317 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 CUEDC2Q9H467 287 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 OLFML3Q9NRN5 406 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 SLC38A7Q9NVC3 462 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 TUBGCP4Q9UGJ1 667 aa22.37■■□□□ 1.17
VTI1B-205ENST00000555543 TTC26A0AVF1 554 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 ADH1AP07327 375 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 WEE2P0C1S8 567 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 MYBP10242 640 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 ABCD1P33897 745 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 SPAG1Q07617 926 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 DCLRE1AQ6PJP8 1040 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 CEP57Q86XR8 500 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 GLYCTKQ8IVS8 523 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 GPR65Q8IYL9 337 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 HVCN1Q96D96 273 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 TTPALQ9BTX7 342 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 MSTO1Q9BUK6 570 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 TRIM9Q9C026 710 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 PANK4Q9NVE7 773 aa22.36■■□□□ 1.17
VTI1B-205ENST00000555543 I3L4J1 428 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 PODXLO00592 558 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 POLR2DO15514 142 aaKnown RBP22.35■■□□□ 1.17
VTI1B-205ENST00000555543 GCNT3O95395 438 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 BRCC3P46736 316 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 IQUBQ8NA54 791 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 LEO1Q8WVC0 666 aaPredicted RBP22.35■■□□□ 1.17
VTI1B-205ENST00000555543 PIK3R5Q8WYR1 880 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 POP1Q99575 1024 aaKnown RBP22.35■■□□□ 1.17
VTI1B-205ENST00000555543 PHF7Q9BWX1 381 aaPredicted RBP22.35■■□□□ 1.17
VTI1B-205ENST00000555543 ADAM7Q9H2U9 754 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 MAN1C1Q9NR34 630 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.35■■□□□ 1.17
VTI1B-205ENST00000555543 FNIP2Q9P278 1114 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 STYXL1Q9Y6J8 313 aa22.35■■□□□ 1.17
VTI1B-205ENST00000555543 LACTBL1A8MY62 500 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 GLUD1P00367 558 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 ITIH3Q06033 890 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 ELAVL2Q12926 359 aaKnown RBP22.34■■□□□ 1.17
VTI1B-205ENST00000555543 L1TD1Q5T7N2 865 aaKnown RBP22.34■■□□□ 1.17
VTI1B-205ENST00000555543 TMC5Q6UXY8 1006 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.34■■□□□ 1.17
VTI1B-205ENST00000555543 PALB2Q86YC2 1186 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 GLIS3Q8NEA6 775 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 LNX1Q8TBB1 728 aaPredicted RBP22.34■■□□□ 1.17
VTI1B-205ENST00000555543 HPS3Q969F9 1004 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 EPHX3Q9H6B9 360 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 SFXN1Q9H9B4 322 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 PLEKHA5Q9HAU0 1116 aa22.34■■□□□ 1.17
VTI1B-205ENST00000555543 CPSF3Q9UKF6 684 aaKnown RBP22.34■■□□□ 1.17
VTI1B-205ENST00000555543 TRIOO75962 3097 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 LOC730098B7Z3J9 87 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 ADRB2P07550 413 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 SPATA31D3P0C874 917 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 FGFR3P22607 806 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 TKTP29401 623 aaKnown RBP22.33■■□□□ 1.17
VTI1B-205ENST00000555543 CASP1P29466 404 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 ADSSP30520 456 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 PPP2R3AQ06190 1150 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 BECN1Q14457 450 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 PSMD5Q16401 504 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 KYAT1Q16773 422 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 SPATA31D4Q6ZUB0 917 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 CCDC65Q8IXS2 484 aa22.33■■□□□ 1.17
VTI1B-205ENST00000555543 KIF12Q96FN5 646 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms