RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 SLC2A13Q96QE2 648 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 NUP88Q99567 741 aaPredicted RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 KRTAP4-5Q9BYR2 181 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 NRDE2Q9H7Z3 1164 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 AKIP1Q9NQ31 210 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 TDP1Q9NUW8 608 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 TRPM5Q9NZQ8 1165 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 REXO2Q9Y3B8 237 aaKnown RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 FPGT-TNNI3KV9GXZ4 949 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 MYBBP1AQ9BQG0 1328 aaKnown RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 SNUPNO95149 360 aaKnown RBP4.4□□□□□ -1.71
VRK1-202ENST00000553683 ABHD16AO95870 558 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 RAP2AP10114 183 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 PCSK1P29120 753 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 ALDH1A3P47895 512 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 TGFB2P61812 414 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 IGBP1P78318 339 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 FAM50AQ14320 339 aaKnown RBP4.4□□□□□ -1.71
VRK1-202ENST00000553683 PTPAQ15257 358 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 IGFL4Q6B9Z1 124 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 TTC7BQ86TV6 843 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 RHOT1Q8IXI2 618 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 FAM43AQ8N2R8 423 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 IL17RDQ8NFM7 739 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 NUP133Q8WUM0 1156 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 CLIP3Q96DZ5 547 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 BOD1Q96IK1 185 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 SCAND2PQ9GZW5 306 aaPredicted RBP4.4□□□□□ -1.71
VRK1-202ENST00000553683 MAN1C1Q9NR34 630 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 SLC2A4RGQ9NR83 387 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 TMEM74BQ9NUR3 256 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 SLC23A1Q9UHI7 598 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 ACTL7AQ9Y615 435 aa4.4□□□□□ -1.71
VRK1-202ENST00000553683 WDR33Q9C0J8 1336 aaKnown RBP4.4□□□□□ -1.71
VRK1-202ENST00000553683 E2F8A0AVK6 867 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 SLC16A6O15403 523 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 RPS6KA4O75676 772 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 RHOBTB3O94955 611 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 ARIH2O95376 493 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 SLPIP03973 132 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 CFIP05156 583 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 MTHFD1P11586 935 aaKnown RBP4.39□□□□□ -1.71
VRK1-202ENST00000553683 FPR1P21462 350 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 EDNRBP24530 442 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 AKAP5P24588 427 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 CHN2P52757 468 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 EVA1CP58658 441 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 RNASE9P60153 205 aaKnown RBP4.39□□□□□ -1.71
VRK1-202ENST00000553683 CREMQ03060 361 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 FHL2Q14192 279 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 THEMIS2Q5TEJ8 643 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 ZNF529Q6P280 563 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 MIER2Q8N344 545 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 FITM2Q8N6M3 262 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 PPM1NQ8N819 430 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 IFI44Q8TCB0 444 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 CCHCR1Q8TD31 782 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 NSUN6Q8TEA1 469 aaKnown RBP4.39□□□□□ -1.71
VRK1-202ENST00000553683 LARP4BQ92615 738 aaKnown RBP4.39□□□□□ -1.71
VRK1-202ENST00000553683 MRGPRX4Q96LA9 322 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 MED15Q96RN5 788 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 CAMKK2Q96RR4 588 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 C11orf54Q9H0W9 315 aaPredicted RBP4.39□□□□□ -1.71
VRK1-202ENST00000553683 RNPEPQ9H4A4 650 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 KLHL11Q9NVR0 708 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 SIDT1Q9NXL6 827 aaKnown RBP4.39□□□□□ -1.71
VRK1-202ENST00000553683 LIMCH1Q9UPQ0 1083 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 POLHQ9Y253 713 aa4.39□□□□□ -1.71
VRK1-202ENST00000553683 MYADML2A6NDP7 307 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 WNT10BO00744 389 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 DTNBO60941 627 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 ANXA1P04083 346 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 FTH1P19P0C7X4 201 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 CKBP12277 381 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 ZFP36P26651 326 aaKnown RBP4.38□□□□□ -1.71
VRK1-202ENST00000553683 FXR1P51114 621 aaKnown RBP eCLIP4.38□□□□□ -1.71
VRK1-202ENST00000553683 NEK2P51955 445 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 KIF23Q02241 960 aaPredicted RBP4.38□□□□□ -1.71
VRK1-202ENST00000553683 TARDBPQ13148 414 aaKnown RBP eCLIP4.38□□□□□ -1.71
VRK1-202ENST00000553683 SPDYE7PQ495Y7 208 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 PABPC1LQ4VXU2 614 aaKnown RBP4.38□□□□□ -1.71
VRK1-202ENST00000553683 PDCD4Q53EL6 469 aaKnown RBP4.38□□□□□ -1.71
VRK1-202ENST00000553683 ABHD17BQ5VST6 288 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 KCNV1Q6PIU1 500 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 MED25Q71SY5 747 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 RSPH3Q86UC2 560 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 ZBTB46Q86UZ6 589 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 ZFPM1Q8IX07 1006 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 CMTR2Q8IYT2 770 aaKnown RBP4.38□□□□□ -1.71
VRK1-202ENST00000553683 PRR18Q8N4B5 295 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 CPA6Q8N4T0 437 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 ZGPATQ8N5A5 531 aaKnown RBP4.38□□□□□ -1.71
VRK1-202ENST00000553683 RNF169Q8NCN4 708 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 OR56A1Q8NGH5 318 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 PROKR1Q8TCW9 393 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 STON2Q8WXE9 905 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 DPF2Q92785 391 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 COQ10AQ96MF6 247 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 CEP89Q96ST8 783 aa4.38□□□□□ -1.71
VRK1-202ENST00000553683 MRIQ9BWK5 157 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms