RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, human

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88C-206	ENST00000553437	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RTP2	Q5QGT7	225 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DCLRE1A	Q6PJP8	1040 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZNF720	Q7Z2F6	126 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SFR1	Q86XK3	245 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	MAP4K3	Q8IVH8	894 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	C3orf58	Q8NDZ4	430 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RIN2	Q8WYP3	895 aa	Predicted RBP	11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FBXL18	Q96ME1	805 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	POP1	Q99575	1024 aa	Known RBP	11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PHF7	Q9BWX1	381 aa	Predicted RBP	11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DZANK1	Q9NVP4	752 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RCOR1	Q9UKL0	485 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.23	□□□□□ -0.61	4e-6	■■■■■ 113.6
CCDC88C-206	ENST00000553437		A0A0B4J269	797 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TTC26	A0AVF1	554 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ANKRD63	C9JTQ0	380 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	HNRNPDL	O14979	420 aa	Known RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	B3GAT3	O94766	335 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	C1R	P00736	705 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ADH1A	P07327	375 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ADRB2	P07550	413 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CLTA	P09496	248 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CD44	P16070	742 aa	Known RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TNFSF9	P41273	254 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	LIG4	P49917	911 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DNM1	Q05193	864 aa	Known RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZBTB6	Q15916	424 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZBTB41	Q5SVQ8	909 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RARS2	Q5T160	578 aa	Known RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FAM171A1	Q5VUB5	890 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ATL3	Q6DD88	541 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KIAA1841	Q6NSI8	718 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	LILRA6	Q6PI73	481 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PRSS55	Q6UWB4	352 aa	Predicted RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PDILT	Q8N807	584 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	LNX1	Q8TBB1	728 aa	Predicted RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KCNG4	Q8TDN1	519 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	C18orf25	Q96B23	403 aa	Predicted RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	BICD1	Q96G01	975 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DDX27	Q96GQ7	796 aa	Known RBP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	UROC1	Q96N76	676 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TTPAL	Q9BTX7	342 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	IKZF4	Q9H2S9	585 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PLEKHA5	Q9HAU0	1116 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SLC38A7	Q9NVC3	462 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FNIP2	Q9P278	1114 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PCDHA7	Q9UN72	937 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	STYXL1	Q9Y6J8	313 aa		11.22	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TISP43	B9A030	160 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	OGT	O15294	1046 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PAPLN	O95428	1278 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	WEE2	P0C1S8	567 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CXCL8	P10145	99 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GAP43	P17677	238 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RPL17	P18621	184 aa	Known RBP	11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FGFR3	P22607	806 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ABCD1	P33897	745 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KCNA1	Q09470	495 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ELAVL2	Q12926	359 aa	Known RBP	11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ENOX2	Q16206	610 aa	Known RBP	11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CES5A	Q6NT32	575 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GPR149	Q86SP6	731 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RNF135	Q8IUD6	432 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TMEM130	Q8N3G9	435 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PIK3R5	Q8WYR1	880 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	STAM	Q92783	540 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CLSTN3	Q9BQT9	956 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FGFBP2	Q9BYJ0	223 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	POMK	Q9H5K3	350 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	C11orf16	Q9NQ32	467 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	OLFML3	Q9NRN5	406 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KBTBD4	Q9NVX7	518 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SEL1L	Q9UBV2	794 aa		11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CPSF3	Q9UKF6	684 aa	Known RBP	11.21	□□□□□ -0.61
CCDC88C-206	ENST00000553437	WDFY4	Q6ZS81	3184 aa		11.21	□□□□□ -0.62
CCDC88C-206	ENST00000553437	LACTBL1	A8MY62	500 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437		I3L4J1	428 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	PODXL	O00592	558 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	ADAM12	O43184	909 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	TGM5	O43548	720 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	GLUD1	P00367	558 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	ADSS	P30520	456 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	RPL9	P32969	192 aa	Known RBP	11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	MTHFR	P42898	656 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	MATR3	P43243	847 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	BRCC3	P46736	316 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	ME1	P48163	572 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	CASP5	P51878	434 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	SPAG1	Q07617	926 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	PSMD5	Q16401	504 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	KYAT1	Q16773	422 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	ATAT1	Q5SQI0	421 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	CNNM4	Q6P4Q7	775 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	RSPO2	Q6UXX9	243 aa	Predicted RBP	11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	TMC5	Q6UXY8	1006 aa		11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.2	□□□□□ -0.62
CCDC88C-206	ENST00000553437	CEP57	Q86XR8	500 aa		11.2	□□□□□ -0.62

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