RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PNKPQ96T60 521 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 PCDHB18PQ96TA0 734 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 INO80BQ9C086 356 aaPredicted RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 TUT1Q9H6E5 874 aaKnown RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 TNFSF13BQ9Y275 285 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 DGKDQ16760 1214 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 SPATA4Q8NEY3 305 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 HHIPL1Q96JK4 782 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 PBKQ96KB5 322 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 FAM84AQ96KN4 292 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 PSMB7Q99436 277 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 BEGAINQ9BUH8 593 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 THAP2Q9H0W7 228 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 STXBP5LQ9Y2K9 1186 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 ZSWIM8A7E2V4 1837 aa28.31■■■□□ 2.12
CCDC88C-205ENST00000553403 ABCB4P21439 1286 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 MCM3P25205 808 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 TNFSF9P41273 254 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 BPIFB4P59827 614 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 TAF1CQ15572 869 aaPredicted RBP28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 SEZ6Q53EL9 994 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 TAF3Q5VWG9 929 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 WDR93Q6P2C0 686 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 MTHFD1LQ6UB35 978 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 OR5B17Q8NGF7 314 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 DDX1Q92499 740 aaKnown RBP28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 ARHGEF26Q96DR7 871 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 ZBTB10Q96DT7 871 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 ARFGAP3Q9NP61 516 aa28.3■■■□□ 2.12
CCDC88C-205ENST00000553403 PHACTR2O75167 634 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 HOXC6P09630 235 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 KRT5P13647 590 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 TBXAS1P24557 533 aaPredicted RBP28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 GPC5P78333 572 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 SMYD5Q6GMV2 418 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 PEX26Q7Z412 305 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 ZNF677Q86XU0 584 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 IFT122Q9HBG6 1241 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 ABCB6Q9NP58 842 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 ERLIN1O75477 346 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 MMEP08473 750 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 TNFAIP2Q03169 654 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 C2orf54Q08AI8 447 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 ZNF568Q3ZCX4 644 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 COL13A1Q5TAT6 717 aaPredicted RBP28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 CCDC70Q6NSX1 233 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 WBP1LQ9NX94 342 aa28.29■■■□□ 2.12
CCDC88C-205ENST00000553403 CLTAP09496 248 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 PPFIA1Q13136 1202 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 CUL2Q13617 745 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 NCOA4Q13772 614 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 RGMBQ6NW40 437 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 DAAM2Q86T65 1068 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 NT5DC3Q86UY8 548 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 MINDY3Q9H8M7 445 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 APOBEC3GQ9HC16 384 aaKnown RBP28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 OSGEPQ9NPF4 335 aa28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 PACSIN2Q9UNF0 486 aaPredicted RBP28.28■■■□□ 2.12
CCDC88C-205ENST00000553403 CTCFP49711 727 aaPredicted RBP28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 INHBEP58166 350 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 GRIK4Q16099 956 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 TMEM132AQ24JP5 1023 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 UBE2Q2Q8WVN8 375 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 ELMO3Q96BJ8 720 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 ZNF668Q96K58 619 aaPredicted RBP28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 OGFRQ9NZT2 677 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 AMFRQ9UKV5 643 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 AKT3Q9Y243 479 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 PCDHB2Q9Y5E7 798 aa28.27■■■□□ 2.12
CCDC88C-205ENST00000553403 B4GALT5O43286 388 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 BUB1BO60566 1050 aaPredicted RBP28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 ACO1P21399 889 aaKnown RBP28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 MAP2K2P36507 400 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 NOP14P78316 857 aaKnown RBP28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 POU5F1Q01860 360 aaKnown RBP28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 DUOXA2Q1HG44 320 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 EEF1DP3Q658K8 133 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 C17orf99Q6UX52 265 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 RUBCNQ92622 972 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 IMPG2Q9BZV3 1241 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 CDT1Q9H211 546 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 ACP6Q9NPH0 428 aa28.26■■■□□ 2.12
CCDC88C-205ENST00000553403 RRN3P2A6NIE6 340 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 ZEB2O60315 1214 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 B4GALT4O60513 344 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 AOC2O75106 756 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 MTA2O94776 668 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 SPOPLQ6IQ16 392 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 USP6NLQ92738 828 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 ARID3AQ99856 593 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 SELENOOQ9BVL4 669 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 FAM53CQ9NYF3 392 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 CNTN6Q9UQ52 1028 aa28.26■■■□□ 2.11
CCDC88C-205ENST00000553403 EVPLQ92817 2033 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 A0A087WZ62 844 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 IL18RAPO95256 599 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 VSNL1P62760 191 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 AMHR2Q16671 573 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 ACAD10Q6JQN1 1059 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 HES6Q96HZ4 224 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms