RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MIER3Q7Z3K6 550 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 CCDC170Q8IYT3 715 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 SPDYE1Q8NFV5 336 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 ATP8B4Q8TF62 1192 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 DNAJB3Q8WWF6 145 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 HVCN1Q96D96 273 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 FAM20AQ96MK3 541 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 KDM4CQ9H3R0 1056 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 WRAP73Q9P2S5 460 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TCEAL9Q9UHQ7 104 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 NFU1Q9UMS0 254 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 HYOU1Q9Y4L1 999 aa8.25□□□□□ -1.09
LIMA1-216ENST00000552909 TANC1Q9C0D5 1861 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 A0A1W2PQC6 194 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 C5orf60A6NFR6 353 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 GRXCR1A8MXD5 290 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 FGBP02675 491 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 KLRC1P26715 233 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 SLC26A2P50443 739 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RPS6KA3P51812 740 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PAK1Q13153 545 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PPP2R5CQ13362 524 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PPP1R7Q15435 360 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 MEA1Q16626 185 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 GKAP1Q5VSY0 366 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 HIBCHQ6NVY1 386 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 MAATS1Q7Z4T9 603 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PIK3R5Q8WYR1 880 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 OSBPL9Q96SU4 736 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PLIN2Q99541 437 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 NUP58Q9BVL2 599 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 NUCKS1Q9H1E3 243 aaKnown RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 GDF3Q9NR23 364 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RGL1Q9NZL6 768 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 CORO1CQ9ULV4 474 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PCDHA12Q9UN75 941 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 DUSP10Q9Y6W6 482 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 IGSF9BQ9UPX0 1349 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RSPH10B2B2RC85 870 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 ZBTB39O15060 712 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 TBX3O15119 743 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 HBP1O60381 514 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 USO1O60763 962 aaKnown RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 SMNDC1O75940 238 aaKnown RBP eCLIP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 STBD1O95210 358 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 ANP32DO95626 131 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 CHRNA1P02708 482 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 FAM153BP0C7A2 387 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RSPH10BP0C881 870 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 MYZAPP0CAP1 466 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 CASP1P29466 404 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 SFNP31947 248 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 CARSP49589 748 aaKnown RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 JAK3P52333 1124 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PRKCEQ02156 737 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 TMEM62Q0P6H9 643 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RIPK1Q13546 671 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 PDCD2Q16342 344 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 QPCTQ16769 361 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 TMEM266Q2M3C6 531 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 FAM153CQ494X1 144 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RASIP1Q5U651 963 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RRAGBQ5VZM2 374 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 MTHFD1LQ6UB35 978 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 RPUSD2Q8IZ73 545 aaKnown RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 WHAMMQ8TF30 809 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 NOC3LQ8WTT2 800 aaKnown RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 IFT81Q8WYA0 676 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 CCT6BQ92526 530 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 AK8Q96MA6 479 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 ALS2CR12Q96Q35 445 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 FAM49AQ9H0Q0 323 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 NHEJ1Q9H9Q4 299 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-216ENST00000552909 TMBIM4Q9HC24 238 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 LRWD1Q9UFC0 647 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 FAM153AQ9UHL3 310 aa8.24□□□□□ -1.09
LIMA1-216ENST00000552909 LOXHD1Q8IVV2 1947 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 RRN3P2A6NIE6 340 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 LGALS16A8MUM7 142 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 LIN7AO14910 233 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-216ENST00000552909 FXR2P51116 673 aaKnown RBP eCLIP8.23□□□□□ -1.09
LIMA1-216ENST00000552909 GUCY2FP51841 1108 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 PDIA5Q14554 519 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 SPA17Q15506 151 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 CABP7Q86V35 215 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 CCDC155Q8N6L0 562 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 NELFBQ8WX92 580 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 HERVK_113Q902F9 699 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 RBM12Q9NTZ6 932 aaKnown RBP8.23□□□□□ -1.09
LIMA1-216ENST00000552909 IRAK4Q9NWZ3 460 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 NOP53Q9NZM5 478 aaKnown RBP8.23□□□□□ -1.09
LIMA1-216ENST00000552909 PLAAQ9Y263 795 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 SIP14410 1827 aa8.23□□□□□ -1.09
LIMA1-216ENST00000552909 POTEMA6NI47 508 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 AHCYL1O43865 530 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 HEXIM1O94992 359 aaKnown RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 C22orf31O95567 290 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 OATP04181 439 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 RAB27AP51159 221 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CYP27A1Q02318 531 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms