RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SCAF8Q9UPN6 1271 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 DNM3Q9UQ16 869 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 WASF2Q9Y6W5 498 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ZNFX1Q9P2E3 1918 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NAV1Q8NEY1 1877 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 CLRN2A0PK11 232 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 LRRD1A4D1F6 860 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 WDR91A4D1P6 747 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 MEIS2O14770 477 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 TBX10O75333 385 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 WFS1O76024 890 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ECEL1O95672 775 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SNHG28P0DPA3 235 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NOVP48745 357 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ZNF543Q08ER8 600 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NFIAQ12857 509 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ORC2Q13416 577 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 KIF22Q14807 665 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 KPNB1Q14974 876 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PARP6Q2NL67 630 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ASPRV1Q53RT3 343 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 EAPPQ56P03 285 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RINT1Q6NUQ1 792 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 TRMT10CQ7L0Y3 403 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 CPXCR1Q8N123 301 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 MYCT1Q8N699 235 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ENDOVQ8N8Q3 282 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 C10orf82Q8WW14 230 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SH2D3AQ9BRG2 576 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ROPN1BQ9BZX4 212 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ROPN1Q9HAT0 212 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 DDX4Q9NQI0 724 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 POLLQ9UGP5 575 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PASKQ96RG2 1323 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 KDM3AQ9Y4C1 1321 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 TCP10L2B9ZVM9 353 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PPEF1O14829 653 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 CYP26A1O43174 497 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SPOPO43791 374 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 CALUO43852 315 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 LUC7L3O95232 432 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NPTXRO95502 500 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ZSCAN5DPP0CG00 497 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ETS1P14921 441 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 GCLMP48507 274 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 YARSP54577 528 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PPP4CP60510 307 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ROR2Q01974 943 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 KLC1Q07866 573 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 CALCOCO2Q13137 446 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RCN2Q14257 317 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RCN1Q15293 331 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 MAPK6Q16659 721 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SLC5A9Q2M3M2 681 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SGO2Q562F6 1265 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 C1orf220Q5T0J3 134 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 INTS8Q75QN2 995 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 OTOAQ7RTW8 1153 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 TTC7BQ86TV6 843 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 DENND1AQ8TEH3 1009 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 FBF1Q8TES7 1133 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 SCG3Q8WXD2 468 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NUP85Q9BW27 656 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ANO3Q9BYT9 981 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NPHS2Q9NP85 383 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 UBN1Q9NPG3 1134 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 FBXO6Q9NRD1 293 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 USP20Q9Y2K6 914 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 DIS3Q9Y2L1 958 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 GTPBP10A4D1E9 387 aaKnown RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 ATP9AO75110 1047 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 UBTFL6P0CB48 400 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 ZCCHC18P0CG32 403 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 EEF2P13639 858 aaKnown RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 ETS2P15036 469 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 RPA1P27694 616 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 GBP1P32455 592 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 SSTR3P32745 418 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 PSMC2P35998 433 aaKnown RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 SKIV2L2P42285 1042 aaKnown RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 PSMC4P43686 418 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 GPC5P78333 572 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 GAD2Q05329 585 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 ACVR2BQ13705 512 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 EFTUD2Q15029 972 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 BMT2Q1RMZ1 405 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 MUM1Q2TAK8 710 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 QRICH1Q2TAL8 776 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 SEL1L2Q5TEA6 688 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 SNX30Q5VWJ9 437 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 C11orf63Q6NUN7 778 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 C4orf50Q6ZRC1 276 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 UBL4BQ8N7F7 174 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 DHX38Q92620 1227 aaKnown RBP5.16□□□□□ -1.58
LIMA1-214ENST00000552783 KIFAP3Q92845 792 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 PTPRN2Q92932 1015 aa5.16□□□□□ -1.58
LIMA1-214ENST00000552783 LRRC19Q9H756 370 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms