RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 PTPN14Q15678 1187 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 CTC1Q2NKJ3 1217 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 TJAP1Q5JTD0 557 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 KIAA1841Q6NSI8 718 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 KANK3Q6NY19 840 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 HPS3Q969F9 1004 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 ASB2Q96Q27 587 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 CPSF3Q9UKF6 684 aaKnown RBP28.25■■■□□ 2.11
CPSF6-205ENST00000550075 TTC26A0AVF1 554 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 ZNF202O95125 648 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 KIF4AO95239 1232 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 GTF2F1P35269 517 aaKnown RBP eCLIP28.24■■■□□ 2.11
CPSF6-205ENST00000550075 POU5F1Q01860 360 aaKnown RBP28.24■■■□□ 2.11
CPSF6-205ENST00000550075 EHHADHQ08426 723 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 ADAM15Q13444 863 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 ENOX2Q16206 610 aaKnown RBP28.24■■■□□ 2.11
CPSF6-205ENST00000550075 USP41Q3LFD5 358 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 RNF168Q8IYW5 571 aaPredicted RBP28.24■■■□□ 2.11
CPSF6-205ENST00000550075 RABGGTAQ92696 567 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 ZMAT2Q96NC0 199 aaKnown RBP28.24■■■□□ 2.11
CPSF6-205ENST00000550075 PAAF1Q9BRP4 392 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 EMILIN2Q9BXX0 1053 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 CACNG4Q9UBN1 327 aa28.24■■■□□ 2.11
CPSF6-205ENST00000550075 F8W810 466 aa28.23■■■□□ 2.11
CPSF6-205ENST00000550075 PER2O15055 1255 aa28.23■■■□□ 2.11
CPSF6-205ENST00000550075 KIAA0391O15091 583 aaKnown RBP28.23■■■□□ 2.11
CPSF6-205ENST00000550075 LDHAP00338 332 aaKnown RBP28.23■■■□□ 2.11
CPSF6-205ENST00000550075 ZBTB41Q5SVQ8 909 aa28.23■■■□□ 2.11
CPSF6-205ENST00000550075 DCLRE1AQ6PJP8 1040 aa28.23■■■□□ 2.11
CPSF6-205ENST00000550075 AUTS2Q8WXX7 1259 aa28.23■■■□□ 2.11
CPSF6-205ENST00000550075 KIF12Q96FN5 646 aa28.23■■■□□ 2.11
CPSF6-205ENST00000550075 UBQLN1Q9UMX0 589 aaKnown RBP28.23■■■□□ 2.11
CPSF6-205ENST00000550075 B3GAT3O94766 335 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 EFEMP2O95967 443 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 RPL9P32969 192 aaKnown RBP28.22■■■□□ 2.11
CPSF6-205ENST00000550075 ACOT2P49753 483 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 CLCNKBP51801 687 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 CREMQ03060 361 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 PSMD2Q13200 908 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 PUS10Q3MIT2 529 aaKnown RBP28.22■■■□□ 2.11
CPSF6-205ENST00000550075 LEXMQ3ZCV2 418 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 ARMCX5Q6P1M9 558 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 EPM2AIP1Q7L775 607 aaPredicted RBP28.22■■■□□ 2.11
CPSF6-205ENST00000550075 GPR65Q8IYL9 337 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 GLIS3Q8NEA6 775 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 ZNF507Q8TCN5 953 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 HASPINQ8TF76 798 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 FAM212AQ96EL1 285 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 IKZF4Q9H2S9 585 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 GOLGA2P5Q9HBQ8 144 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 FAM50BQ9Y247 325 aa28.22■■■□□ 2.11
CPSF6-205ENST00000550075 LACTBL1A8MY62 500 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 LINC01565O15544 149 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 MEFVO15553 781 aaPredicted RBP28.21■■■□□ 2.11
CPSF6-205ENST00000550075 TRAPPC3O43617 180 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 ADSSP30520 456 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 DSG1Q02413 1049 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 FAM160A1Q05DH4 1040 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 SOX4Q06945 474 aaPredicted RBP28.21■■■□□ 2.11
CPSF6-205ENST00000550075 UPP1Q16831 310 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 HS2ST1Q7LGA3 356 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 PPFIBP1Q86W92 1011 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 GPR62Q9BZJ7 368 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 ASB7Q9H672 318 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 SLC39A2Q9NP94 309 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP28.21■■■□□ 2.11
CPSF6-205ENST00000550075 DERAQ9Y315 318 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 UNC80Q8N2C7 3258 aa28.21■■■□□ 2.11
CPSF6-205ENST00000550075 H3BQ06 376 aaPredicted RBP28.2■■■□□ 2.1
CPSF6-205ENST00000550075 PODXLO00592 558 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 C2CD2LO14523 706 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 KLRC4O43908 158 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 TBX10O75333 385 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 ADRB2P07550 413 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 CYP3A5P20815 502 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 CASP10Q92851 521 aa28.2■■■□□ 2.1
CPSF6-205ENST00000550075 C18orf25Q96B23 403 aaPredicted RBP28.2■■■□□ 2.1
CPSF6-205ENST00000550075 IL18RAPO95256 599 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 RPN1P04843 607 aaKnown RBP28.19■■■□□ 2.1
CPSF6-205ENST00000550075 SNRPFP62306 86 aaKnown RBP28.19■■■□□ 2.1
CPSF6-205ENST00000550075 BMT2Q1RMZ1 405 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 KMT5BQ4FZB7 885 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 PDXDC1Q6P996 788 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 BEST2Q8NFU1 509 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 FAM213AQ9BRX8 229 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 CHST7Q9NS84 486 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 NUB1Q9Y5A7 615 aa28.19■■■□□ 2.1
CPSF6-205ENST00000550075 EXTL3O43909 919 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 CLASP2O75122 1294 aaKnown RBP28.18■■■□□ 2.1
CPSF6-205ENST00000550075 GLP2RO95838 553 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 ADH1AP07327 375 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 LTBRP36941 435 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 TMEM132DQ14C87 1099 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 FAM171A1Q5VUB5 890 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 LLGL2Q6P1M3 1020 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.18■■■□□ 2.1
CPSF6-205ENST00000550075 TAS1R1Q7RTX1 841 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 FMR1NBQ8N0W7 255 aaPredicted RBP28.18■■■□□ 2.1
CPSF6-205ENST00000550075 SCFD1Q8WVM8 642 aa28.18■■■□□ 2.1
CPSF6-205ENST00000550075 SAAL1Q96ER3 474 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms