RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SLC24A5Q71RS6 500 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 DGKHQ86XP1 1220 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 HOMER1Q86YM7 354 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SLC39A11Q8N1S5 342 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ST13P5Q8NFI4 369 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SLC22A17Q8WUG5 538 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 GATAD2BQ8WXI9 593 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 GTPBP3Q969Y2 492 aaKnown RBP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 FERD3LQ96RJ6 166 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 PCYT2Q99447 389 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 TMEM117Q9H0C3 514 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ATP6V0A4Q9HBG4 840 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 PARD6AQ9NPB6 346 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SH2B1Q9NRF2 756 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 RGS18Q9NS28 235 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 C1orf112Q9NSG2 853 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 TMEM161AQ9NX61 479 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 MAP3K20Q9NYL2 800 aaKnown RBP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ERAP1Q9NZ08 941 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SPG21Q9NZD8 308 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 IGSF9Q9P2J2 1179 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ST3GAL5Q9UNP4 418 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SIT1Q9Y3P8 196 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 FRMPD4Q14CM0 1322 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 KDM3AQ9Y4C1 1321 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ZZEF1O43149 2961 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 RALGAPA1Q6GYQ0 2036 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 FRYQ5TBA9 3013 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 ZBTB5O15062 677 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 RPS6KA5O75582 802 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 CLSTN1O94985 981 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 GHRHP01286 108 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 KCNA2P16389 499 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 BMP6P22004 513 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 PPM1AP35813 382 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 PLCB4Q15147 1175 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 CEP135Q66GS9 1140 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 GPR149Q86SP6 731 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 CABP7Q86V35 215 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 TMEM173Q86WV6 379 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-204ENST00000549064 TRIM22Q8IYM9 498 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 VPS52Q8N1B4 723 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 LRRC43Q8N309 656 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 SLC44A3Q8N4M1 653 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 STK35Q8TDR2 534 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 SEPT1Q8WYJ6 367 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 MTMR8Q96EF0 704 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 FAM227BQ96M60 508 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 PIGSQ96S52 555 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 SENP7Q9BQF6 1050 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 LRRC3Q9BY71 257 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 ZBP1Q9H171 429 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 CLEC4MQ9H2X3 399 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-204ENST00000549064 SMARCAD1Q9H4L7 1026 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 ARHGEF3Q9NR81 526 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 DNAJB12Q9NXW2 375 aaKnown RBP7.42□□□□□ -1.22
LIMA1-204ENST00000549064 DDX19BQ9UMR2 479 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 SMG5Q9UPR3 1016 aaKnown RBP7.42□□□□□ -1.22
LIMA1-204ENST00000549064 PCDHA2Q9Y5H9 948 aa7.42□□□□□ -1.22
LIMA1-204ENST00000549064 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.42□□□□□ -1.22
LIMA1-204ENST00000549064 DOCK6Q96HP0 2047 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 A0A0D9SFI3 127 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 FAM221AA4D161 298 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 RRN3P2A6NIE6 340 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 B4E1Z4 1266 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 STAM2O75886 525 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 SRFP11831 508 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 FGFR3P22607 806 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 GIPRP48546 466 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 FAM189BP81408 668 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 CSTF1Q05048 431 aaKnown RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 PPP2R3AQ06190 1150 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 PCDH1Q08174 1060 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 DMWDQ09019 674 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 MPP2Q14168 576 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 LETM2Q2VYF4 491 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 PKDCCQ504Y2 493 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 CLLU1OSQ5K130 101 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 MTHFD1LQ6UB35 978 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ADAMTSL4Q6UY14 1074 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 GK5Q6ZS86 529 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ZNF589Q86UQ0 364 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 FAM228AQ86W67 206 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 SAMD3Q8N6K7 520 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 GPR161Q8N6U8 529 aaKnown RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ENAHQ8N8S7 591 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 RNF169Q8NCN4 708 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 PJA1Q8NG27 643 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 GRIN3AQ8TCU5 1115 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ESR2Q92731 530 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ZNF837Q96EG3 531 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 MYADMQ96S97 322 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 SFXN1Q9H9B4 322 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 BRMS1Q9HCU9 246 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 SPATA6Q9NWH7 488 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ATXN7L1Q9ULK2 861 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-204ENST00000549064 TTC41PQ6P2S7 1318 aa7.41□□□□□ -1.22
LIMA1-204ENST00000549064 ZFYVE26Q68DK2 2539 aa7.4□□□□□ -1.22
LIMA1-204ENST00000549064 SMIM35A0A1B0GVV1 85 aa7.4□□□□□ -1.22
LIMA1-204ENST00000549064 KLRF2D3W0D1 207 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms