RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 DAPK3O43293 454 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 UBXN7O94888 489 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 NBPF7P0C2Y1 421 aaPredicted RBP5.23□□□□□ -1.57
VPS29-205ENST00000548539 TRIM27P14373 513 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 WASP42768 502 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 MRE11P49959 708 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 NEK3P51956 506 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 CCDC157Q569K6 752 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 CCDC149Q6ZUS6 474 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 Q6ZVL8 140 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 UNC5BQ8IZJ1 945 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 FAM156AQ8NDB6 213 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 FBXO18Q8NFZ0 1043 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 GPR150Q8NGU9 434 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 CCHCR1Q8TD31 782 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 SNX33Q8WV41 574 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 MPHOSPH6Q99547 160 aaKnown RBP5.23□□□□□ -1.57
VPS29-205ENST00000548539 CGRRF1Q99675 332 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 B3GNT5Q9BYG0 378 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 LDAHQ9H6V9 325 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 RIOX1Q9H6W3 641 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 NRDE2Q9H7Z3 1164 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 ING3Q9NXR8 418 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 PCDHB1Q9Y5F3 818 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 RPTORQ8N122 1335 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 C2orf78A6NCI8 922 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 FAM171A2A8MVW0 826 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 SLC26A4O43511 780 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 B3GALT2O43825 422 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 TUSC2O75896 110 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 FTLP02792 175 aaPredicted RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 HTR1BP28222 390 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 ECHS1P30084 290 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 PTGS2P35354 604 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 SLC6A9P48067 706 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 PER3P56645 1201 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 SLC25A3Q00325 362 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 DSC2Q02487 901 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 HDAC1Q13547 482 aaPredicted RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 ZKSCAN2Q63HK3 967 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 TRIM68Q6AZZ1 485 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 FAM180AQ6UWF9 173 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 COL23A1Q86Y22 540 aaPredicted RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 DRC7Q8IY82 874 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 SHCBP1Q8NEM2 672 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 PJA1Q8NG27 643 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 OR14K1Q8NGZ2 314 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 GFM2Q969S9 779 aaKnown RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 RGMAQ96B86 450 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 ZNF764Q96H86 408 aaPredicted RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 PAWRQ96IZ0 340 aaKnown RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 UHRF1Q96T88 793 aaPredicted RBP5.22□□□□□ -1.57
VPS29-205ENST00000548539 MPHOSPH9Q99550 1183 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 LRFN3Q9BTN0 628 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 PCGF6Q9BYE7 350 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 FAM204AQ9H8W3 233 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 GPRC5BQ9NZH0 403 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 USP25Q9UHP3 1055 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 NR2E3Q9Y5X4 410 aa5.22□□□□□ -1.57
VPS29-205ENST00000548539 H3BML4 177 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 ADCY6O43306 1168 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 ALDH1A2O94788 518 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 LMNAP02545 664 aaKnown RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 MYL3P08590 195 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 RHCEP18577 417 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 PROZP22891 400 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 MAP2K6P52564 334 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 MEF2AQ02078 507 aaPredicted RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 RHDQ02161 417 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 BIRC2Q13490 618 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 CNGB1Q14028 1251 aaPredicted RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 BRD3Q15059 726 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 SAFBQ15424 915 aaKnown RBP eCLIP5.21□□□□□ -1.58
VPS29-205ENST00000548539 MST1LQ2TV78 715 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 CYB5RLQ6IPT4 315 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 NPNTQ6UXI9 565 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 CHST15Q7LFX5 561 aaPredicted RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 TAS1R1Q7RTX1 841 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 CLEC14AQ86T13 490 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 GLCCI1Q86VQ1 547 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 ANKRD35Q8N283 1001 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 PLA2G15Q8NCC3 412 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.21□□□□□ -1.58
VPS29-205ENST00000548539 PARD3BQ8TEW8 1205 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 HOXB13Q92826 284 aaPredicted RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 HAS1Q92839 578 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 GCDHQ92947 438 aaPredicted RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 TTC17Q96AE7 1141 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 CLPTM1LQ96KA5 538 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 RPS6KC1Q96S38 1066 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 PDCD2LQ9BRP1 358 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 ARMT1Q9H993 441 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 KMT5AQ9NQR1 393 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 ADARB2Q9NS39 739 aaKnown RBP5.21□□□□□ -1.58
VPS29-205ENST00000548539 TDP1Q9NUW8 608 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 ZNHIT2Q9UHR6 403 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 SIK3Q9Y2K2 1263 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 VWA7Q9Y334 891 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 PCDHGB6Q9Y5F9 930 aa5.21□□□□□ -1.58
VPS29-205ENST00000548539 CFAP20Q9Y6A4 193 aaKnown RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms