RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 MLXIPQ9HAP2 919 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 SAMSN1Q9NSI8 373 aaKnown RBP9.24□□□□□ -0.93
VPS29-203ENST00000546588 TYW1Q9NV66 732 aaKnown RBP9.24□□□□□ -0.93
VPS29-203ENST00000546588 ERAP1Q9NZ08 941 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 ARHGAP28Q9P2N2 729 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 IMPACTQ9P2X3 320 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 PHLPP2Q6ZVD8 1323 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.23□□□□□ -0.93
VPS29-203ENST00000546588 HAS3O00219 553 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 MAPK13O15264 365 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 SLC16A3O15427 465 aaKnown RBP9.23□□□□□ -0.93
VPS29-203ENST00000546588 TGFB1I1O43294 461 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 CBFA2T2O43439 604 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 BNIP3LO60238 219 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 HBP1O60381 514 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 AOC2O75106 756 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 SASH3O75995 380 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 GNA14O95837 355 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 F2P00734 622 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 PIGRP01833 764 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 LGALS2P05162 132 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 SSBP05455 408 aaKnown RBP eCLIP9.23□□□□□ -0.93
VPS29-203ENST00000546588 ADCYAP1R1P41586 468 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 FKBP3Q00688 224 aaKnown RBP9.23□□□□□ -0.93
VPS29-203ENST00000546588 CAP1Q01518 475 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 SP3Q02447 781 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 DHX8Q14562 1220 aaKnown RBP9.23□□□□□ -0.93
VPS29-203ENST00000546588 NR1I3Q14994 352 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 EMC2Q15006 297 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 PLCB4Q15147 1175 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 CCDC144BQ3MJ40 725 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 PLA2G4FQ68DD2 849 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 CDCA2Q69YH5 1023 aaPredicted RBP9.23□□□□□ -0.93
VPS29-203ENST00000546588 EEPD1Q7L9B9 569 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 FILIP1Q7Z7B0 1213 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 MAP4K3Q8IVH8 894 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 FAM114A1Q8IWE2 563 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 FAM178BQ8IXR5 827 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 CSGALNACT2Q8N6G5 542 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 TMEM161BQ8NDZ6 487 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 GOLGA5Q8TBA6 731 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 HPS3Q969F9 1004 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 PMEPA1Q969W9 287 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 JPH2Q9BR39 696 aaPredicted RBP9.23□□□□□ -0.93
VPS29-203ENST00000546588 AZI2Q9H6S1 392 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 TMEM206Q9H813 350 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 LATS2Q9NRM7 1088 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 NRBP2Q9NSY0 501 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 DMAC2Q9NW81 257 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 RNF186Q9NXI6 227 aa9.23□□□□□ -0.93
VPS29-203ENST00000546588 CITO14578 2027 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 TANC1Q9C0D5 1861 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 A0A1W2PQC6 194 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 TMEM150BA6NC51 233 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 KCNJ18B7U540 433 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 NOP56O00567 594 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 USO1O60763 962 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 FGFR1OPO95684 399 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 KRT18P05783 430 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 MYBP10242 640 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 CST5P28325 142 aaPredicted RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 GSTT1P30711 240 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 NAMPTP43490 491 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 PSMC4P43686 418 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 ST13P50502 369 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 PRMT2P55345 433 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 NPEPPSP55786 919 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 ADAM17P78536 824 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 TBX2Q13207 712 aaPredicted RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 KCNJ12Q14500 433 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 KRT31Q15323 416 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 XKR9Q5GH70 373 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 MIIPQ5JXC2 388 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 ODR4Q5SWX8 454 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 TMEM63BQ5T3F8 832 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 UTP14CQ5TAP6 766 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 Q8N3U1 123 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 SLC7A3Q8WY07 619 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 TRIB2Q92519 343 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 COPS5Q92905 334 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 CEP170P1Q96L14 293 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 TRIM5Q9C035 493 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 XPO4Q9C0E2 1151 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 MRPL44Q9H9J2 332 aaKnown RBP9.22□□□□□ -0.93
VPS29-203ENST00000546588 STYXL1Q9Y6J8 313 aa9.22□□□□□ -0.93
VPS29-203ENST00000546588 MBLAC1A4D2B0 266 aaPredicted RBP9.21□□□□□ -0.94
VPS29-203ENST00000546588 LGALS16A8MUM7 142 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 PMM2O15305 246 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 DUSP11O75319 330 aaKnown RBP9.21□□□□□ -0.94
VPS29-203ENST00000546588 C22orf31O95567 290 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 TPM3P06753 285 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 FURINP09958 794 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 BMP4P12644 408 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 AKR1A1P14550 325 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 FGFR3P22607 806 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 NMT1P30419 496 aaKnown RBP9.21□□□□□ -0.94
VPS29-203ENST00000546588 NPTX2P47972 431 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 GJA9P57773 515 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 CTBSQ01459 385 aa9.21□□□□□ -0.94
VPS29-203ENST00000546588 TNFAIP2Q03169 654 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms