RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 CLTAP09496 248 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 EPCAMP16422 314 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 TNFSF9P41273 254 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 ME1P48163 572 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 LIG4P49917 911 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 CASP5P51878 434 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 POU5F1Q01860 360 aaKnown RBP12.47□□□□□ -0.41
YBX3-216ENST00000544622 KYAT1Q16773 422 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 HERC4Q5GLZ8 1057 aaPredicted RBP12.47□□□□□ -0.41
YBX3-216ENST00000544622 RTP2Q5QGT7 225 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 ZBTB41Q5SVQ8 909 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 LILRA6Q6PI73 481 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 PPFIBP1Q86W92 1011 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 ADHFE1Q8IWW8 467 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 LNX1Q8TBB1 728 aaPredicted RBP12.47□□□□□ -0.41
YBX3-216ENST00000544622 B3GALT6Q96L58 329 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 C7orf25Q9BPX7 421 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 EMILIN2Q9BXX0 1053 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 FGFBP2Q9BYJ0 223 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 LRRC27Q9C0I9 530 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 MRPL44Q9H9J2 332 aaKnown RBP12.47□□□□□ -0.41
YBX3-216ENST00000544622 GOLGA2P5Q9HBQ8 144 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 SLC38A7Q9NVC3 462 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 PANK4Q9NVE7 773 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 FAM50BQ9Y247 325 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 HPSEQ9Y251 543 aa12.47□□□□□ -0.41
YBX3-216ENST00000544622 SF3B1O75533 1304 aaKnown RBP eCLIP12.46□□□□□ -0.41
YBX3-216ENST00000544622 TISP43B9A030 160 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 B3GAT3O94766 335 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 URODP06132 367 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 SRGAP2BP0DMP2 458 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 CXCL8P10145 99 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 FGFR3P22607 806 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 CMA1P23946 247 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 RPL9P32969 192 aaKnown RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 KRT85P78386 507 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 AMPD3Q01432 767 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 ITIH3Q06033 890 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 BECN1Q14457 450 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 ENOX2Q16206 610 aaKnown RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 L1TD1Q5T7N2 865 aaKnown RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 LLGL2Q6P1M3 1020 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 CRELD2Q6UXH1 353 aaPredicted RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 GJD3Q8N144 294 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 HASPINQ8TF76 798 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 KHSRPQ92945 711 aaKnown RBP eCLIP12.46□□□□□ -0.412e-7■■□□□ 13.3
YBX3-216ENST00000544622 C18orf25Q96B23 403 aaPredicted RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 DHX58Q96C10 678 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 BICD1Q96G01 975 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 DDX27Q96GQ7 796 aaKnown RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 TSPAN18Q96SJ8 248 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 ADAM7Q9H2U9 754 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 MAGEF1Q9HAY2 307 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.46□□□□□ -0.41
YBX3-216ENST00000544622 KCNH3Q9ULD8 1083 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 USP15Q9Y4E8 981 aaPredicted RBP12.46□□□□□ -0.41
YBX3-216ENST00000544622 PCDHB13Q9Y5F0 798 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 TRIP11Q15643 1979 aa12.46□□□□□ -0.41
YBX3-216ENST00000544622 C2CD2LO14523 706 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 MYBP10242 640 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 HARSP12081 509 aaKnown RBP12.45□□□□□ -0.42
YBX3-216ENST00000544622 IDEP14735 1019 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 CYP3A5P20815 502 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 KLRC2P26717 231 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 LRPAP1P30533 357 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 ELAVL2Q12926 359 aaKnown RBP12.45□□□□□ -0.42
YBX3-216ENST00000544622 ALCAMQ13740 583 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 CBX2Q14781 532 aaPredicted RBP12.45□□□□□ -0.42
YBX3-216ENST00000544622 FAM171A1Q5VUB5 890 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 SLFN12LQ6IEE8 588 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 EPM2AIP1Q7L775 607 aaPredicted RBP12.45□□□□□ -0.42
YBX3-216ENST00000544622 FEZF2Q8TBJ5 459 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 PIK3R5Q8WYR1 880 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 FBXL18Q96ME1 805 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 CLSTN3Q9BQT9 956 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 TTPALQ9BTX7 342 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 MSTO1Q9BUK6 570 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 FAM13BQ9NYF5 915 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 TBC1D7Q9P0N9 293 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 ATP6V1DQ9Y5K8 247 aa12.45□□□□□ -0.42
YBX3-216ENST00000544622 LACTBL1A8MY62 500 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 LOC730098B7Z3J9 87 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 PODXLO00592 558 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 TGM5O43548 720 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 ACTN4O43707 911 aaKnown RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 TBC1D4O60343 1298 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 GCNT3O95395 438 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 ADH1AP07327 375 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 SLFN14P0C7P3 912 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 CA8P35219 290 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 HOXD13P35453 343 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 MRPL58Q14197 206 aaKnown RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 TPRNQ4KMQ1 711 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 KIAA1841Q6NSI8 718 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 KANK3Q6NY19 840 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 CD302Q8IX05 232 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 CCDC65Q8IXS2 484 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 GLIS3Q8NEA6 775 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 ZNF507Q8TCN5 953 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms