RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-223ENST00000543658 VWA3BQ502W6 1294 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 GLRA4Q5JXX5 417 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 LMBRD2Q68DH5 695 aaPredicted RBP12.87□□□□□ -0.35
DDB1-223ENST00000543658 AGMOQ6ZNB7 445 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 ZNF598Q86UK7 904 aaKnown RBP12.87□□□□□ -0.35
DDB1-223ENST00000543658 IRF2BP1Q8IU81 584 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 HELQQ8TDG4 1101 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 ANP32BQ92688 251 aaKnown RBP12.87□□□□□ -0.35
DDB1-223ENST00000543658 FAM193BQ96PV7 902 aaPredicted RBP12.87□□□□□ -0.35
DDB1-223ENST00000543658 GAD1Q99259 594 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.87□□□□□ -0.355e-7■■□□□ 12.3
DDB1-223ENST00000543658 MRPL9Q9BYD2 267 aaKnown RBP12.87□□□□□ -0.35
DDB1-223ENST00000543658 TRIM5Q9C035 493 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 NDST4Q9H3R1 872 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 GRPEL1Q9HAV7 217 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 TMEM8AQ9HCN3 771 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 UBQLN1Q9UMX0 589 aaKnown RBP12.87□□□□□ -0.35
DDB1-223ENST00000543658 C2CD2Q9Y426 696 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 NLRC5Q86WI3 1866 aa12.87□□□□□ -0.35
DDB1-223ENST00000543658 KIAA1671Q9BY89 1806 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 ARL5CA6NH57 179 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 NFICP08651 508 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 FGFR1P11362 822 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 GTF2H1P32780 548 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 PIK3CAP42336 1068 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 GCLMP48507 274 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 SCNN1GP51170 649 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 DLG4P78352 724 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 FAM189BP81408 668 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 GRIK3Q13003 919 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 TRPC3Q13507 836 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 TMEM240Q5SV17 173 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 KRT39Q6A163 491 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.86□□□□□ -0.353e-18■■■■□ 24.6
DDB1-223ENST00000543658 CCDC150Q8NCX0 1101 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 SLC35C1Q96A29 364 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 BORCS6Q96GS4 357 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 PCMTD1Q96MG8 357 aaPredicted RBP12.86□□□□□ -0.35
DDB1-223ENST00000543658 SLC9A7Q96T83 725 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 IMPG2Q9BZV3 1241 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 MTMR12Q9C0I1 747 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 HSD3B7Q9H2F3 369 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 RNF39Q9H2S5 420 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 PCDH10Q9P2E7 1040 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 KANSL3Q9P2N6 904 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 SLC4A7Q9Y6M7 1214 aa12.86□□□□□ -0.35
DDB1-223ENST00000543658 SMIM28A0A1B0GU29 152 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 TBKBP1A7MCY6 615 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 MEIS3P2A8K0S8 358 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 LGALS16A8MUM7 142 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 RBAK-RBAKDNI3L0D1 243 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 KRT19P08727 400 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 KCNE1P15382 129 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 MAGEA10P43363 369 aaPredicted RBP12.85□□□□□ -0.35
DDB1-223ENST00000543658 FMO5P49326 533 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 MRE11P49959 708 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 DEFB103AP81534 67 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 UBXN1Q04323 297 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 NOMO2Q5JPE7 1267 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 FAM117BQ6P1L5 589 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 EFCAB13Q8IY85 973 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 HERVK_113Q902F9 699 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 ZFP42Q96MM3 310 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 YME1L1Q96TA2 773 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 POP1Q99575 1024 aaKnown RBP12.85□□□□□ -0.35
DDB1-223ENST00000543658 ZBED2Q9BTP6 218 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 UBE2OQ9C0C9 1292 aaKnown RBP12.85□□□□□ -0.35
DDB1-223ENST00000543658 TMEM117Q9H0C3 514 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 INTS13Q9NVM9 706 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 IFNKQ9P0W0 207 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 ITGA11Q9UKX5 1188 aa12.85□□□□□ -0.35
DDB1-223ENST00000543658 P4HA2O15460 535 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 OFD1O75665 1012 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 POMCP01189 267 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 WNT7BP56706 349 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 XKR4Q5GH76 650 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 SPOUT1Q5T280 376 aaKnown RBP12.84□□□□□ -0.35
DDB1-223ENST00000543658 SARM1Q6SZW1 724 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 ALKAL1Q6UXT8 129 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 GBP6Q6ZN66 633 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 LRRC43Q8N309 656 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 PLEKHO2Q8TD55 490 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 TOP1MTQ969P6 601 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 RNPC3Q96LT9 517 aaKnown RBP12.84□□□□□ -0.35
DDB1-223ENST00000543658 ZNF560Q96MR9 790 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 DPP3Q9NY33 737 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 GCNT4Q9P109 453 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 SCN1AP35498 2009 aa12.84□□□□□ -0.35
DDB1-223ENST00000543658 A0A1B0GTH6 734 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 ITGB3P05106 788 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 ATP2A2P16615 1042 aaKnown RBP12.83□□□□□ -0.36
DDB1-223ENST00000543658 CYP3A5P20815 502 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 EPHB4P54760 987 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 CLDN10P78369 228 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 PPP3CAQ08209 521 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 TUSC3Q13454 348 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 ZACNQ401N2 412 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 CBWD6Q4V339 395 aa12.83□□□□□ -0.36
DDB1-223ENST00000543658 PAN2Q504Q3 1202 aaKnown RBP12.83□□□□□ -0.36
DDB1-223ENST00000543658 WDR44Q5JSH3 913 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms