RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 CBWD2Q8IUF1 395 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 BRSK2Q8IWQ3 736 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 C12orf56Q8IXR9 622 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 FAM186BQ8IYM0 893 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 ZSWIM2Q8NEG5 633 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 MICAL1Q8TDZ2 1067 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 RABGGTAQ92696 567 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 CCDC127Q96BQ5 260 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 ANKRD36BP1Q96IX9 119 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 UROC1Q96N76 676 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 GAS2L1Q99501 681 aaPredicted RBP6.85□□□□□ -1.31
LTBR-212ENST00000543542 TMEM175Q9BSA9 504 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 C11orf84Q9BUA3 381 aaPredicted RBP6.85□□□□□ -1.31
LTBR-212ENST00000543542 COLEC11Q9BWP8 271 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 SEMA6BQ9H3T3 888 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 PRDM12Q9H4Q4 367 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 ASB7Q9H672 318 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 RC3H2Q9HBD1 1191 aaKnown RBP6.85□□□□□ -1.31
LTBR-212ENST00000543542 GOLGA2P5Q9HBQ8 144 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 ANO10Q9NW15 660 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 SPG21Q9NZD8 308 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 TMEM63CQ9P1W3 806 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 CNTN3Q9P232 1028 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 DNAJB4Q9UDY4 337 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 PUF60Q9UHX1 559 aaKnown RBP6.85□□□□□ -1.31
LTBR-212ENST00000543542 UBQLN1Q9UMX0 589 aaKnown RBP6.85□□□□□ -1.31
LTBR-212ENST00000543542 TRAF3IP3Q9Y228 551 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 NUB1Q9Y5A7 615 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 PDCD11Q14690 1871 aaKnown RBP6.85□□□□□ -1.31
LTBR-212ENST00000543542 CEP290O15078 2479 aa6.85□□□□□ -1.31
LTBR-212ENST00000543542 COL4A6Q14031 1691 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 ANK1P16157 1881 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 TTC26A0AVF1 554 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 PPP1R3GB7ZBB8 358 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 RFXAPO00287 272 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 PODXLO00592 558 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 FAM189A1O60320 539 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 PHACTR2O75167 634 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 FGF18O76093 207 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 ARHGEF15O94989 841 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 GALTP07902 379 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 NFICP08651 508 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 CCDC192P0DO97 292 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 BMP6P22004 513 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 CLCNKBP51801 687 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 FKBP3Q00688 224 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 POU5F1Q01860 360 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 CYP24A1Q07973 514 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 BIRC3Q13489 604 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 MYBPC2Q14324 1141 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 DPCR1Q3MIW9 517 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 DCAF17Q5H9S7 520 aaPredicted RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 TCERG1LQ5VWI1 586 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 LMBRD2Q68DH5 695 aaPredicted RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 CENPPQ6IPU0 288 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 CRELD2Q6UXH1 353 aaPredicted RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 ALKAL1Q6UXT8 129 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 Q7L0L9 218 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 SLC9A9Q8IVB4 645 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 COLGALT2Q8IYK4 626 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 MICALL1Q8N3F8 863 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 DEFB123Q8N688 67 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 CSGALNACT2Q8N6G5 542 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 KLHL23Q8NBE8 558 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 HASPINQ8TF76 798 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 GDPD5Q8WTR4 605 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 CLP1Q92989 425 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 C18orf25Q96B23 403 aaPredicted RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 EEF2KMTQ96G04 330 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 DDX27Q96GQ7 796 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 ZMAT2Q96NC0 199 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 PPP1R10Q96QC0 940 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 TSPAN18Q96SJ8 248 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 PLVAPQ9BX97 442 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 NAT10Q9H0A0 1025 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 CXCL16Q9H2A7 254 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 MMRN2Q9H8L6 949 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 PDE11AQ9HCR9 933 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 ALG13Q9NP73 1137 aaKnown RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 ENTPD7Q9NQZ7 604 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 DPP3Q9NY33 737 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 MAGEC2Q9UBF1 373 aaPredicted RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 CACNG4Q9UBN1 327 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 TUBGCP4Q9UGJ1 667 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 RWDD2AQ9UIY3 292 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 PLAGL2Q9UPG8 496 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 DERAQ9Y315 318 aa6.84□□□□□ -1.31
LTBR-212ENST00000543542 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.84□□□□□ -1.31
LTBR-212ENST00000543542 COL4A4P53420 1690 aaPredicted RBP6.84□□□□□ -1.32
LTBR-212ENST00000543542 PLXNA4Q9HCM2 1894 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 SYCE3A1L190 88 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 H3BNC9 293 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 INPPL1O15357 1258 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 TRAPPC3O43617 180 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 STX10O60499 249 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 B3GAT3O94766 335 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 ADRB2P07550 413 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 CYP3A5P20815 502 aa6.83□□□□□ -1.32
LTBR-212ENST00000543542 RPL9P32969 192 aaKnown RBP6.83□□□□□ -1.32
LTBR-212ENST00000543542 CASP4P49662 377 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms