RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 IGSF9Q9P2J2 1179 aa12.96□□□□□ -0.33
CLSTN3-211ENST00000541667 DUSP12Q9UNI6 340 aa12.96□□□□□ -0.33
CLSTN3-211ENST00000541667 MYO15AQ9UKN7 3530 aa12.96□□□□□ -0.33
CLSTN3-211ENST00000541667 I3L4J1 428 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 PI15O43692 258 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 LAMP2P13473 410 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 PLS3P13797 630 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 BRCC3P46736 316 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 MCM2P49736 904 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 PTPN5P54829 565 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 OSTNP61366 133 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 CREMQ03060 361 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 ELAVL2Q12926 359 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 DMP1Q13316 513 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 MRPL58Q14197 206 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 SEZ6Q53EL9 994 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 LARP1BQ659C4 914 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 CWF19L1Q69YN2 538 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 MPZL3Q6UWV2 235 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 C18orf25Q96B23 403 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 DDX27Q96GQ7 796 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 SNX27Q96L92 541 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 UROC1Q96N76 676 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 RPP25Q9BUL9 199 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 CNTN3Q9P232 1028 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 MTRRQ9UBK8 725 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 KIF3AQ9Y496 699 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 BACE2Q9Y5Z0 518 aa12.95□□□□□ -0.34
CLSTN3-211ENST00000541667 SPDYE4A6NLX3 237 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 H3BQV1 296 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 TKTP29401 623 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 OR1D2P34982 312 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 CLCN5P51795 746 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 NUBP1P53384 320 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 NTHL1P78549 312 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 CACNB1Q02641 598 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 ZRSR1Q15695 479 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 ZBTB6Q15916 424 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 ZNF568Q3ZCX4 644 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 ASTLQ6HA08 431 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 GRASPQ7Z6J2 395 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 ACAP3Q96P50 834 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 FIZ1Q96SL8 496 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 CCDC94Q9BW85 323 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.94□□□□□ -0.344e-6■■□□□ 12.1
CLSTN3-211ENST00000541667 KCND2Q9NZV8 630 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 SMC3Q9UQE7 1217 aa12.94□□□□□ -0.34
CLSTN3-211ENST00000541667 KRBA1A5PL33 1030 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 SLC26A4O43511 780 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 GALR2O43603 387 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 FAM189A1O60320 539 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 TOM1L1O75674 476 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 ABLIM3O94929 683 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 C8AP07357 584 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 POU2F2P09086 479 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 HNRNPA1P09651 372 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 HOXA9P31269 272 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 GBP2P32456 591 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 ZNF131P52739 623 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 NCKAP1LP55160 1127 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 MCL1Q07820 350 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 HTR4Q13639 388 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 UVSSAQ2YD98 709 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 AXDND1Q5T1B0 1012 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 ELMSAN1Q6PJG2 1045 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 ZPBP2Q6X784 338 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 ST13P5Q8NFI4 369 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 STAMQ92783 540 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 NXPE3Q969Y0 559 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 AK8Q96MA6 479 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 PIDD1Q9HB75 910 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 WNT16Q9UBV4 365 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 CDY1Q9Y6F8 540 aa12.93□□□□□ -0.34
CLSTN3-211ENST00000541667 H0Y858 1186 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 PODXLO00592 558 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 ADRB2P07550 413 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 RPL9P32969 192 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 PTPAQ15257 358 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 SF3A1Q15459 793 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 SLC8B1Q6J4K2 584 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 PDXDC1Q6P996 788 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 USP49Q70CQ1 688 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 HAUS6Q7Z4H7 955 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 APBB1IPQ7Z5R6 666 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 ITFG1Q8TB96 612 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 REEP2Q9BRK0 252 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 TCHPQ9BT92 498 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 TOPORSQ9NS56 1045 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 FAM86C1Q9NVL1 165 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 HCFC1R1Q9NWW0 138 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 DNMT3BQ9UBC3 853 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 KCNG1Q9UIX4 513 aa12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-211ENST00000541667 CITO14578 2027 aa12.91□□□□□ -0.34
CLSTN3-211ENST00000541667 MYH11P35749 1972 aa12.91□□□□□ -0.34
CLSTN3-211ENST00000541667 TTC26A0AVF1 554 aa12.91□□□□□ -0.34
CLSTN3-211ENST00000541667 CCL16O15467 120 aa12.91□□□□□ -0.34
CLSTN3-211ENST00000541667 AOC1P19801 751 aa12.91□□□□□ -0.34
CLSTN3-211ENST00000541667 FSHRP23945 695 aa12.91□□□□□ -0.34
CLSTN3-211ENST00000541667 SMTNP53814 917 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms