RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 EPHX2P34913 555 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 GJA5P36382 358 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 LMBRD2Q68DH5 695 aaPredicted RBP14.78□□□□□ -0.04
RTN3-210ENST00000540798 EEPD1Q7L9B9 569 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 IQCKQ8N0W5 287 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 TCP11Q8WWU5 503 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 NUP85Q9BW27 656 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 WNT8AQ9H1J5 351 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 APOBEC3GQ9HC16 384 aaKnown RBP14.78□□□□□ -0.04
RTN3-210ENST00000540798 PCDHB2Q9Y5E7 798 aa14.78□□□□□ -0.04
RTN3-210ENST00000540798 TTLL13PA6NNM8 815 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 CYP1A1P04798 512 aaPredicted RBP14.77□□□□□ -0.04
RTN3-210ENST00000540798 PIK3CAP42336 1068 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 PLCB4Q15147 1175 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 PPP2R5EQ16537 467 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 WDR44Q5JSH3 913 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 BRSK2Q8IWQ3 736 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 UBR7Q8N806 425 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 ZNF564Q8TBZ8 553 aaPredicted RBP14.77□□□□□ -0.04
RTN3-210ENST00000540798 RIN2Q8WYP3 895 aaPredicted RBP14.77□□□□□ -0.04
RTN3-210ENST00000540798 PIK3R5Q8WYR1 880 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 NR2E1Q9Y466 385 aa14.77□□□□□ -0.04
RTN3-210ENST00000540798 ATMINO43313 823 aaPredicted RBP14.77□□□□□ -0.05
RTN3-210ENST00000540798 COMTP21964 271 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 CTNNA1P35221 906 aaKnown RBP14.77□□□□□ -0.05
RTN3-210ENST00000540798 HSPA9P38646 679 aaKnown RBP14.77□□□□□ -0.05
RTN3-210ENST00000540798 SLC26A2P50443 739 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 LAMTOR4Q0VGL1 99 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 MXD4Q14582 209 aaPredicted RBP14.77□□□□□ -0.05
RTN3-210ENST00000540798 KCTD2Q14681 263 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 SMYD5Q6GMV2 418 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 IFT81Q8WYA0 676 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 KRT35Q92764 455 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 SYT17Q9BSW7 474 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 AVENQ9NQS1 362 aaPredicted RBP14.77□□□□□ -0.05
RTN3-210ENST00000540798 BPIFB4P59827 614 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 CUL2Q13617 745 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 MAATS1Q7Z4T9 603 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 UBL4BQ8N7F7 174 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 CCDC26Q8TAB7 109 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 ZNF653Q96CK0 615 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 ACO2Q99798 780 aaKnown RBP14.77□□□□□ -0.05
RTN3-210ENST00000540798 ANKFY1Q9P2R3 1169 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 MGAMO43451 1857 aa14.77□□□□□ -0.05
RTN3-210ENST00000540798 TOM1L1O75674 476 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 KRT5P13647 590 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 PROZP22891 400 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 AP3M2P53677 418 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 CD302Q8IX05 232 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 MRPL4Q9BYD3 311 aaKnown RBP14.76□□□□□ -0.05
RTN3-210ENST00000540798 FAM204AQ9H8W3 233 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.76□□□□□ -0.05
RTN3-210ENST00000540798 AMACRQ9UHK6 382 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 PCDHA3Q9Y5H8 950 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 FAM170AA1A519 330 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 CLTAP09496 248 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 HSPA6P17066 643 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 MARCKSL1P49006 195 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 PSEN1P49768 467 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 CENPCQ03188 943 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 MCL1Q07820 350 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 ARMC9Q7Z3E5 817 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 TRIM50Q86XT4 487 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 OR5B17Q8NGF7 314 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 PLEKHA4Q9H4M7 779 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 ERVK-5Q9HDB9 667 aa14.76□□□□□ -0.05
RTN3-210ENST00000540798 PHACTR2O75167 634 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 MYBL1P10243 752 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 MESDQ14696 234 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 SPOPLQ6IQ16 392 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 WDR49Q8IV35 697 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 FBXO16Q8IX29 292 aaPredicted RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 MCOLN2Q8IZK6 566 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 PTPRHQ9HD43 1115 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 CHORDC1Q9UHD1 332 aaPredicted RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 GOLGA8KD6RF30 607 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 CLDN3O15551 220 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 TBXAS1P24557 533 aaPredicted RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 ZNF132P52740 706 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 SLC20A2Q08357 652 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 TTLL12Q14166 644 aaPredicted RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 DPY19L2Q6NUT2 758 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 GTF3C2Q8WUA4 911 aaPredicted RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 GLG1Q92896 1179 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 ZIM3Q96PE6 472 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 C2orf40Q9H1Z8 148 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 CCDC66A2RUB6 948 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 UNCXA6NJT0 531 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 TTI1O43156 1089 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 HSF2BPO75031 334 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 CALCAP01258 141 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 ZNF211Q13398 564 aaPredicted RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 SNAPC2Q13487 334 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 BIRC3Q13489 604 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 TRIM11Q96F44 468 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 SPATA33Q96N06 139 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 NEUROG2Q9H2A3 272 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 CNOT8Q9UFF9 292 aaKnown RBP14.75□□□□□ -0.05
RTN3-210ENST00000540798 NUB1Q9Y5A7 615 aa14.75□□□□□ -0.05
RTN3-210ENST00000540798 NOP56O00567 594 aaKnown RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms