RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 AATKQ6ZMQ8 1374 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 FOSP01100 380 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-213ENST00000539950 POMCP01189 267 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 OSMP13725 252 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 IL2RBP14784 551 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 GSPT1P15170 499 aaKnown RBP4.92□□□□□ -1.62
VPS13A-213ENST00000539950 PCSK1P29120 753 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 PTH2RP49190 550 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 MTNR1BP49286 362 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 UBXN2BQ14CS0 331 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 FAM180AQ6UWF9 173 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 DRC7Q8IY82 874 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 SLC44A3Q8N4M1 653 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 COG1Q8WTW3 980 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 ADI1Q9BV57 179 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 ALOXE3Q9BYJ1 711 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 R3HDMLQ9H3Y0 253 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 ALG13Q9NP73 1137 aaKnown RBP4.92□□□□□ -1.62
VPS13A-213ENST00000539950 FBXO34Q9NWN3 711 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 PTGFRNQ9P2B2 879 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 USP25Q9UHP3 1055 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 PCDHGA2Q9Y5H1 932 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 ACTL7AQ9Y615 435 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 SALL3Q9BXA9 1300 aa4.92□□□□□ -1.62
VPS13A-213ENST00000539950 GPR39O43194 453 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 ESRRBO95718 433 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 FGFR4P22455 802 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 MPLP40238 635 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 BLOC1S1P78537 153 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 MXRA7P84157 204 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 CCDC142Q17RM4 750 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 PRR16Q569H4 304 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 GJC2Q5T442 439 aaPredicted RBP4.91□□□□□ -1.62
VPS13A-213ENST00000539950 OTUD7BQ6GQQ9 843 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 ZNF529Q6P280 563 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 UBE3BQ7Z3V4 1068 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 SIMC1Q8NDZ2 872 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 OR2I1PQ8NGU4 316 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 RNF31Q96EP0 1072 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 Q96MF0 132 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 FAM126AQ9BYI3 521 aaPredicted RBP4.91□□□□□ -1.62
VPS13A-213ENST00000539950 REXO4Q9GZR2 422 aaKnown RBP4.91□□□□□ -1.62
VPS13A-213ENST00000539950 FAM30AQ9NZY2 134 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 TMA7Q9Y2S6 64 aaKnown RBP4.91□□□□□ -1.62
VPS13A-213ENST00000539950 TNFRSF18Q9Y5U5 241 aa4.91□□□□□ -1.62
VPS13A-213ENST00000539950 ENDOD1O94919 500 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 AMY1AP04745 511 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 FDXRP22570 491 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 GCSHP23434 173 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 CXCR5P32302 372 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 SLC5A3P53794 718 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 ERVK-21P61565 698 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 CXADRP78310 365 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 HSD11B2P80365 405 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 MGAT2Q10469 447 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 FAPQ12884 760 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 MPP3Q13368 585 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 SPDYE7PQ495Y7 208 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 ARMC6Q6NXE6 501 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 RD3Q7Z3Z2 195 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 ZGPATQ8N5A5 531 aaKnown RBP4.9□□□□□ -1.63
VPS13A-213ENST00000539950 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS13A-213ENST00000539950 CCHCR1Q8TD31 782 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 CASKIN2Q8WXE0 1202 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 NACC2Q96BF6 587 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 SLC2A13Q96QE2 648 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 RNPEPQ9H4A4 650 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 TESQ9UGI8 421 aaKnown RBP4.9□□□□□ -1.63
VPS13A-213ENST00000539950 ZBTB21Q9ULJ3 1066 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 RUVBL1Q9Y265 456 aaKnown RBP4.9□□□□□ -1.63
VPS13A-213ENST00000539950 NOX1Q9Y5S8 564 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 MAST3O60307 1309 aa4.9□□□□□ -1.63
VPS13A-213ENST00000539950 MASP2O00187 686 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 VIL1P09327 827 aaKnown RBP4.89□□□□□ -1.63
VPS13A-213ENST00000539950 CNGA1P29973 690 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 IL12RB1P42701 662 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 MRPS21P82921 87 aaKnown RBP4.89□□□□□ -1.63
VPS13A-213ENST00000539950 MTM1Q13496 603 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 FBXO42Q6P3S6 717 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 SEM1Q6ZVN7 128 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 KRT26Q7Z3Y9 468 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 SPATS2Q86XZ4 545 aaKnown RBP4.89□□□□□ -1.63
VPS13A-213ENST00000539950 WDR66Q8TBY9 1149 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 FUBP1Q96AE4 644 aaKnown RBP4.89□□□□□ -1.63
VPS13A-213ENST00000539950 TMEM74BQ9NUR3 256 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 TMEM140Q9NV12 185 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 DNM3Q9UQ16 869 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 GPR45Q9Y5Y3 372 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 COX11Q9Y6N1 276 aa4.89□□□□□ -1.63
VPS13A-213ENST00000539950 GPR32O75388 356 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 ZFPL1O95159 310 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 GPANK1O95872 356 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 CKBP12277 381 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 CPEP16870 476 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 POU3F3P20264 500 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-213ENST00000539950 C21orf58P58505 322 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 CYP2A13Q16696 494 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 FAM98AQ8NCA5 519 aaKnown RBP4.88□□□□□ -1.63
VPS13A-213ENST00000539950 BOD1Q96IK1 185 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 GALNT9Q9HCQ5 603 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms