RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SLC16A4O15374 487 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 RALAP11233 206 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CA4P22748 312 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CRKP46108 304 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CEP55Q53EZ4 464 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 HHATQ5VTY9 493 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 KAZNQ674X7 775 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 RNF43Q68DV7 783 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CGB2Q6NT52 195 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 TMEM179Q6ZVK1 233 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 FAM71AQ8IYT1 594 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 LBHD1Q9BQE6 289 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 DCLK3Q9C098 648 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 LRRC4BQ9NT99 713 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 SPATS2LQ9NUQ6 558 aaKnown RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 RRM1P23921 792 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 IRX1P78414 480 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CAV1Q03135 178 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 STAT4Q14765 748 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 ZYXQ15942 572 aaKnown RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CCDC6Q16204 474 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 LLGL2Q6P1M3 1020 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 LONP2Q86WA8 852 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CBWD2Q8IUF1 395 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 SLC9A9Q8IVB4 645 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 LMNTD2Q8IXW0 634 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 C12orf50Q8NA57 414 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 CPA5Q8WXQ8 436 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 MKL1Q969V6 931 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 NKX1-2Q9UD57 310 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 PRKAG3Q9UGI9 489 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 TCEAL9Q9UHQ7 104 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 IPO5O00410 1097 aaKnown RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 POLGP54098 1239 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 PEX3P56589 373 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 CDR2Q01850 454 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 PTK6Q13882 451 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 SPARCL1Q14515 664 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 ASRGL1Q7L266 308 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 CCDC89Q8N998 374 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 TMX4Q9H1E5 349 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 USH1CQ9Y6N9 552 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 WDR91A4D1P6 747 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 PPEF1O14829 653 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 P4HA2O15460 535 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 CYP3A4P08684 503 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 MAGEA4P43358 317 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 PPP2R5CQ13362 524 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 HAUS6Q7Z4H7 955 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 DAW1Q8N136 415 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 PLEKHO2Q8TD55 490 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 PSPC1Q8WXF1 523 aaKnown RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 SMC6Q96SB8 1091 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 TRABDQ9H4I3 376 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 EHMT1Q9H9B1 1298 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 TOPORSQ9NS56 1045 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 XIRP1Q702N8 1843 aaKnown RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 MTA2O94776 668 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 CBX6O95503 412 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 SSTR3P32745 418 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 WDR4P57081 412 aaKnown RBP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 P3H1Q32P28 736 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 ACAD10Q6JQN1 1059 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 RHBDF2Q6PJF5 856 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 SIAH1Q8IUQ4 282 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 AGGF1Q8N302 714 aaeCLIP11.97□□□□□ -0.49
SYNE1-237ENST00000539504 SEMA4DQ92854 862 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 CNKSR1Q969H4 720 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 HERPUD2Q9BSE4 406 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 KIAA1683Q9H0B3 1180 aa11.97□□□□□ -0.49
SYNE1-237ENST00000539504 SMNDC1O75940 238 aaKnown RBP eCLIP11.96□□□□□ -0.49
SYNE1-237ENST00000539504 NEFHP12036 1026 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 CD58P19256 250 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 EPHB2P29323 1055 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 SARNPP82979 210 aaKnown RBP11.96□□□□□ -0.49
SYNE1-237ENST00000539504 SYDE1Q6ZW31 735 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-237ENST00000539504 KCTD17Q8N5Z5 321 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 PI4K2AQ9BTU6 479 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 DBNDD1Q9H9R9 158 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 RNPEPL1Q9HAU8 725 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 KLHL11Q9NVR0 708 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 ATP5HO75947 161 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 ADRB2P07550 413 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 MYBL1P10243 752 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 STAT2P52630 851 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 KRT39Q6A163 491 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 MIS18BP1Q6P0N0 1132 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 BBOF1Q8ND07 529 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 FAM84AQ96KN4 292 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 CFAP57Q96MR6 1250 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 GPRC5CQ9NQ84 441 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 KCND2Q9NZV8 630 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 ZFATQ9P243 1243 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 ZNF148Q9UQR1 794 aa11.96□□□□□ -0.49
SYNE1-237ENST00000539504 TP73O15350 636 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 DCTN3O75935 186 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 CCNB1P14635 433 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 IVDP26440 423 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 CETN2P41208 172 aa11.96□□□□□ -0.5
SYNE1-237ENST00000539504 RASSF2P50749 326 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms