RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 GRM5P41594 1212 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 STRN3Q13033 797 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 UPP1Q16831 310 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 SLC44A3Q8N4M1 653 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 NXPE3Q969Y0 559 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 ACAP3Q96P50 834 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 C17orf75Q9HAS0 396 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 ARHGAP28Q9P2N2 729 aa19.53■□□□□ 0.72
PCF11-206ENST00000533018 VPS13AQ96RL7 3174 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 TMEM189-UBE2V1I3L0A0 370 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 I3L4J1 428 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 XYLBO75191 536 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 HNRNPA1P09651 372 aaKnown RBP eCLIP19.52■□□□□ 0.72
PCF11-206ENST00000533018 FGFR3P22607 806 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 IGFBP6P24592 240 aaPredicted RBP19.52■□□□□ 0.72
PCF11-206ENST00000533018 SMTNP53814 917 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 ATP2C1P98194 919 aaPredicted RBP19.52■□□□□ 0.72
PCF11-206ENST00000533018 AXDND1Q5T1B0 1012 aaPredicted RBP19.52■□□□□ 0.72
PCF11-206ENST00000533018 SLC7A14Q8TBB6 771 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 TIPINQ9BVW5 301 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 SLC38A7Q9NVC3 462 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 ANKFY1Q9P2R3 1169 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 CA14Q9ULX7 337 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 CDY1Q9Y6F8 540 aa19.52■□□□□ 0.72
PCF11-206ENST00000533018 PI15O43692 258 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 PAPLNO95428 1278 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 MCF2P10911 925 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 NPR3P17342 541 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 AOC1P19801 751 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 TKTP29401 623 aaKnown RBP19.51■□□□□ 0.71
PCF11-206ENST00000533018 MATR3P43243 847 aaKnown RBP eCLIP19.51■□□□□ 0.71
PCF11-206ENST00000533018 BRCC3P46736 316 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 NTHL1P78549 312 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 MAPK7Q13164 816 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 CWF19L1Q69YN2 538 aaKnown RBP19.51■□□□□ 0.71
PCF11-206ENST00000533018 MPZL3Q6UWV2 235 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 TAS1R3Q7RTX0 852 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 DDX27Q96GQ7 796 aaKnown RBP19.51■□□□□ 0.71
PCF11-206ENST00000533018 PNMA5Q96PV4 448 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 PTPRHQ9HD43 1115 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 MTRRQ9UBK8 725 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 WNT16Q9UBV4 365 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 KCNG1Q9UIX4 513 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 SMC3Q9UQE7 1217 aa19.51■□□□□ 0.71
PCF11-206ENST00000533018 PODXLO00592 558 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 GFRA3O60609 400 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 SRFP11831 508 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 PLS3P13797 630 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 GUCY2CP25092 1073 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 SOX4Q06945 474 aaPredicted RBP19.5■□□□□ 0.71
PCF11-206ENST00000533018 RAB33AQ14088 237 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 ALKAL1Q6UXT8 129 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 ANKS3Q6ZW76 656 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 C3orf58Q8NDZ4 430 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 ZBTB45Q96K62 511 aaPredicted RBP19.5■□□□□ 0.71
PCF11-206ENST00000533018 NUB1Q9Y5A7 615 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 NUMBLQ9Y6R0 609 aa19.5■□□□□ 0.71
PCF11-206ENST00000533018 CD2BP2O95400 341 aaKnown RBP19.49■□□□□ 0.71
PCF11-206ENST00000533018 PLA2G4BP0C869 781 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 HOXA9P31269 272 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 CACNB1Q02641 598 aaPredicted RBP19.49■□□□□ 0.71
PCF11-206ENST00000533018 UVSSAQ2YD98 709 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 SEZ6Q53EL9 994 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 CD300LGQ6UXG3 332 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 RSPO2Q6UXX9 243 aaPredicted RBP19.49■□□□□ 0.71
PCF11-206ENST00000533018 SYT2Q8N9I0 419 aaPredicted RBP19.49■□□□□ 0.71
PCF11-206ENST00000533018 GPR152Q8TDT2 470 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 SNX27Q96L92 541 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 ZMAT2Q96NC0 199 aaKnown RBP19.49■□□□□ 0.71
PCF11-206ENST00000533018 RTP3Q9BQQ7 232 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 CDH7Q9ULB5 785 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 ZFP37Q9Y6Q3 630 aaPredicted RBP19.49■□□□□ 0.71
PCF11-206ENST00000533018 CFAP54Q96N23 3096 aa19.49■□□□□ 0.71
PCF11-206ENST00000533018 NPHP3-ACAD11A0A0J9YXS1 232 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 PROZP22891 400 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 MCM2P49736 904 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 ARPP19P56211 112 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 HTR4Q13639 388 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 NOLC1Q14978 699 aaKnown RBP eCLIP19.48■□□□□ 0.711e-11■□□□□ 9.8
PCF11-206ENST00000533018 XKR4Q5GH76 650 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 HYIQ5T013 277 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 LARP1BQ659C4 914 aaKnown RBP19.48■□□□□ 0.71
PCF11-206ENST00000533018 ARL6IP4Q66PJ3 421 aaKnown RBP19.48■□□□□ 0.71
PCF11-206ENST00000533018 KCTD17Q8N5Z5 321 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 TMEM161BQ8NDZ6 487 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 SPIRE2Q8WWL2 714 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 C18orf25Q96B23 403 aaPredicted RBP19.48■□□□□ 0.71
PCF11-206ENST00000533018 BICD1Q96G01 975 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 NTPCRQ9BSD7 190 aaKnown RBP19.48■□□□□ 0.71
PCF11-206ENST00000533018 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.48■□□□□ 0.71
PCF11-206ENST00000533018 BACE2Q9Y5Z0 518 aa19.48■□□□□ 0.71
PCF11-206ENST00000533018 KRBA1A5PL33 1030 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 ANHXE9PGG2 379 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 CLDN3O15551 220 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 TOM1L1O75674 476 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 KCNE1P15382 129 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 ELF1P32519 619 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 SLC12A3P55017 1021 aa19.47■□□□□ 0.71
PCF11-206ENST00000533018 DHX8Q14562 1220 aaKnown RBP19.47■□□□□ 0.71
PCF11-206ENST00000533018 PABPC1LQ4VXU2 614 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms