RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 KCNN1Q92952 543 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 DDX27Q96GQ7 796 aaKnown RBP14.55□□□□□ -0.08
VPS28-211ENST00000530790 USP28Q96RU2 1077 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 USTQ9Y2C2 406 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 PLXNA3P51805 1871 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 DENND4AQ7Z401 1863 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 CCDC195A0A1B0GUA6 201 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 PODXLO00592 558 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 TRAK2O60296 914 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 RFPL2O75678 378 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 SPATA31D3P0C874 917 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 MYBP10242 640 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 DDIT3P35638 169 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 SOX4Q06945 474 aaPredicted RBP14.54□□□□□ -0.08
VPS28-211ENST00000530790 MTMR3Q13615 1198 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 LIN9Q5TKA1 542 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 TRIM67Q6ZTA4 783 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 SPATA31D4Q6ZUB0 917 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 HFE2Q6ZVN8 426 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 USP49Q70CQ1 688 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 OTOP3Q7RTS5 596 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 ZDHHC14Q8IZN3 488 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 PLCD3Q8N3E9 789 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 C3orf58Q8NDZ4 430 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 LNX1Q8TBB1 728 aaPredicted RBP14.54□□□□□ -0.08
VPS28-211ENST00000530790 FEZF2Q8TBJ5 459 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 STAMQ92783 540 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 ACSF2Q96CM8 615 aaPredicted RBP14.54□□□□□ -0.08
VPS28-211ENST00000530790 ZMAT2Q96NC0 199 aaKnown RBP14.54□□□□□ -0.08
VPS28-211ENST00000530790 CLIC6Q96NY7 704 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 RHOBTB2Q9BYZ6 727 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 ZDHHC7Q9NXF8 308 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 TBX20Q9UMR3 447 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 MORC2Q9Y6X9 1032 aaPredicted RBP14.54□□□□□ -0.08
VPS28-211ENST00000530790 MYH11P35749 1972 aa14.54□□□□□ -0.08
VPS28-211ENST00000530790 CLUHO75153 1309 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 TMEM221A6NGB7 291 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 M0R296 226 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 PIGRP01833 764 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 CXCL8P10145 99 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 FGFR3P22607 806 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 PPP2R3AQ06190 1150 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 SIGLEC14Q08ET2 396 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 SLC39A14Q15043 492 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 STK38Q15208 465 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 SEZ6Q53EL9 994 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 RRAGBQ5VZM2 374 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 MAP4K3Q8IVH8 894 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 KREMEN2Q8NCW0 462 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 SMG7Q92540 1137 aaKnown RBP14.53□□□□□ -0.08
VPS28-211ENST00000530790 PIDD1Q9HB75 910 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 FBXW11Q9UKB1 542 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 SORCS3Q9UPU3 1222 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 GTF3C3Q9Y5Q9 886 aa14.53□□□□□ -0.08
VPS28-211ENST00000530790 I3L4J1 428 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 CLTAP09496 248 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 TKTP29401 623 aaKnown RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 RPL9P32969 192 aaKnown RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 STAT6P42226 847 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 BRCC3P46736 316 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 NASPP49321 788 aaPredicted RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 KYAT1Q16773 422 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 SLC10A6Q3KNW5 377 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 LILRA6Q6PI73 481 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 CCDC73Q6ZRK6 1079 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 ANKS3Q6ZW76 656 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 DYMQ7RTS9 669 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 C18orf25Q96B23 403 aaPredicted RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 ZNF707Q96C28 371 aaPredicted RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 MFSD14AQ96MC6 490 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 ZNF396Q96N95 335 aaPredicted RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 FIZ1Q96SL8 496 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 CLSTN3Q9BQT9 956 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 HAPLN2Q9GZV7 340 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 PLEKHA5Q9HAU0 1116 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 MTRRQ9UBK8 725 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 NUB1Q9Y5A7 615 aa14.52□□□□□ -0.09
VPS28-211ENST00000530790 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.52□□□□□ -0.09
VPS28-211ENST00000530790 TRIOO75962 3097 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 OGTO15294 1046 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 MEFVO15553 781 aaPredicted RBP14.51□□□□□ -0.09
VPS28-211ENST00000530790 ZMYND10O75800 440 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 ASGR2P07307 311 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 NMT1P30419 496 aaKnown RBP14.51□□□□□ -0.09
VPS28-211ENST00000530790 GTF2BQ00403 316 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 SV2BQ7L1I2 683 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 SFR1Q86XK3 245 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 UBALD2Q8IYN6 164 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 DDX12PQ92771 950 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 KIF12Q96FN5 646 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 MSTO1Q9BUK6 570 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 WDR6Q9NNW5 1121 aaKnown RBP14.51□□□□□ -0.09
VPS28-211ENST00000530790 TUBGCP4Q9UGJ1 667 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 LIMD1Q9UGP4 676 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 ARIH1Q9Y4X5 557 aaPredicted RBP14.51□□□□□ -0.09
VPS28-211ENST00000530790 CDY1Q9Y6F8 540 aa14.51□□□□□ -0.09
VPS28-211ENST00000530790 TTC26A0AVF1 554 aa14.5□□□□□ -0.09
VPS28-211ENST00000530790 SYN3O14994 580 aa14.5□□□□□ -0.09
VPS28-211ENST00000530790 ADAM12O43184 909 aa14.5□□□□□ -0.09
VPS28-211ENST00000530790 XPOTO43592 962 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms