RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FAM13AO94988 1023 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 CXCL8P10145 99 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 FGFR3P22607 806 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 SSTR3P32745 418 aaPredicted RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 CA8P35219 290 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 HOXD13P35453 343 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 GUCY2FP51841 1108 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 ENOX2Q16206 610 aaKnown RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 TMEM132AQ24JP5 1023 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 FAM171A1Q5VUB5 890 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 RRAGBQ5VZM2 374 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 CRELD2Q6UXH1 353 aaPredicted RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 TMC5Q6UXY8 1006 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 ZNF720Q7Z2F6 126 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 MAP4K3Q8IVH8 894 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 GPR65Q8IYL9 337 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 PDILTQ8N807 584 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 RIN2Q8WYP3 895 aaPredicted RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 PIK3R5Q8WYR1 880 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 HPS3Q969F9 1004 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 ZNF707Q96C28 371 aaPredicted RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 ACAP3Q96P50 834 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 LRFN3Q9BTN0 628 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 LARSQ9P2J5 1176 aaKnown RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 ANKFY1Q9P2R3 1169 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 TUBGCP4Q9UGJ1 667 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 STYXL1Q9Y6J8 313 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 C2CD4DB7Z1M9 353 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 K7ENM7 598 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 PPEF2O14830 753 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 TGM5O43548 720 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 TBC1D4O60343 1298 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 YEATS4O95619 227 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 URODP06132 367 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 SP100P23497 879 aaPredicted RBP11.65□□□□□ -0.54
CD44-227ENST00000528086 KLRC2P26717 231 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 TKTP29401 623 aaKnown RBP11.65□□□□□ -0.54
CD44-227ENST00000528086 CASP1P29466 404 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 SMTNP53814 917 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 DNM1Q05193 864 aaKnown RBP11.65□□□□□ -0.54
CD44-227ENST00000528086 STK38Q15208 465 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 USP41Q3LFD5 358 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 HERC4Q5GLZ8 1057 aaPredicted RBP11.65□□□□□ -0.54
CD44-227ENST00000528086 KIAA1841Q6NSI8 718 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 GPR149Q86SP6 731 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 PALB2Q86YC2 1186 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 GLYCTKQ8IVS8 523 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 DDX27Q96GQ7 796 aaKnown RBP11.65□□□□□ -0.54
CD44-227ENST00000528086 FAM84AQ96KN4 292 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 RPGRIP1Q96KN7 1286 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 TCHPQ9BT92 498 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 CCDC94Q9BW85 323 aaPredicted RBP11.65□□□□□ -0.54
CD44-227ENST00000528086 SMOC2Q9H3U7 446 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 MAN1C1Q9NR34 630 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 KBTBD4Q9NVX7 518 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 TBC1D7Q9P0N9 293 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 FNIP2Q9P278 1114 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 RCOR1Q9UKL0 485 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 PCDHA7Q9UN72 937 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 FAM50BQ9Y247 325 aa11.65□□□□□ -0.54
CD44-227ENST00000528086 TSC2P49815 1807 aa11.65□□□□□ -0.55
CD44-227ENST00000528086 SF3B1O75533 1304 aaKnown RBP eCLIP11.64□□□□□ -0.558e-6■■■■■ 107
CD44-227ENST00000528086 FSD2A1L4K1 749 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 LACTBL1A8MY62 500 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 CLDN3O15551 220 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 GPR37L1O60883 481 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 B3GAT3O94766 335 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 ITIH3Q06033 890 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 STRN3Q13033 797 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 DCLRE1AQ6PJP8 1040 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 POTEHQ6S545 545 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 TTPALQ9BTX7 342 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 EMILIN2Q9BXX0 1053 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 ZHX3Q9H4I2 956 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 DZANK1Q9NVP4 752 aa11.64□□□□□ -0.55
CD44-227ENST00000528086 CPSF3Q9UKF6 684 aaKnown RBP11.64□□□□□ -0.55
CD44-227ENST00000528086 PODXLO00592 558 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 NRG2O14511 850 aaPredicted RBP11.63□□□□□ -0.55
CD44-227ENST00000528086 OGTO15294 1046 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 DCXO43602 365 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 CUTAO60888 179 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 CLTAP09496 248 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 EHHADHQ08426 723 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 MRPL58Q14197 206 aaKnown RBP11.63□□□□□ -0.55
CD44-227ENST00000528086 PSMD5Q16401 504 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 TPRNQ4KMQ1 711 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 CCDC73Q6ZRK6 1079 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 SV2BQ7L1I2 683 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 PPFIBP1Q86W92 1011 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 CMASQ8NFW8 434 aaPredicted RBP11.63□□□□□ -0.55
CD44-227ENST00000528086 MTRRQ9UBK8 725 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 DAXXQ9UER7 740 aaPredicted RBP11.63□□□□□ -0.55
CD44-227ENST00000528086 STK39Q9UEW8 545 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 CCDC39Q9UFE4 941 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 FBXW11Q9UKB1 542 aa11.63□□□□□ -0.55
CD44-227ENST00000528086 ZDBF2Q9HCK1 2354 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 CCDC195A0A1B0GUA6 201 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 HNRNPDLO14979 420 aaKnown RBP11.62□□□□□ -0.55
CD44-227ENST00000528086 SPTLC1O15269 473 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 TBCAO75347 108 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms