RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SYN1P17600 705 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 RPL17P18621 184 aaKnown RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 MALP21145 153 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 PEX2P28328 305 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 POU5F1Q01860 360 aaKnown RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 SNAPC2Q13487 334 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 MTM1Q13496 603 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 RAPGEF1Q13905 1077 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 PLS1Q14651 629 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 ZNF385BQ569K4 471 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 CCDC157Q569K6 752 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 ICE2Q659A1 982 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 MCTP2Q6DN12 878 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 RSPH3Q86UC2 560 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 TRMT2AQ8IZ69 625 aaKnown RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 ZGPATQ8N5A5 531 aaKnown RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 CCHCR1Q8TD31 782 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 ADAMTS17Q8TE56 1095 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 ANKS1AQ92625 1134 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 MTFMTQ96DP5 389 aaKnown RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 TMX3Q96JJ7 454 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 UHRF1Q96T88 793 aaPredicted RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 BTBD1Q9H0C5 482 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 ENKD1Q9H0I2 346 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 ATP6V0A4Q9HBG4 840 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 CD320Q9NPF0 282 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 PNPOQ9NVS9 261 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 TAGLN3Q9UI15 199 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 FAM184BQ9ULE4 1060 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 SMG5Q9UPR3 1016 aaKnown RBP5.71□□□□□ -1.5
CD44-220ENST00000525688 PCDHGB6Q9Y5F9 930 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 PCDHA3Q9Y5H8 950 aa5.71□□□□□ -1.5
CD44-220ENST00000525688 TNIKQ9UKE5 1360 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 CTTNBP2Q8WZ74 1663 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 TCAF2A6NFQ2 919 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 PHGDHO43175 533 aaKnown RBP5.7□□□□□ -1.5
CD44-220ENST00000525688 MGEA5O60502 916 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 MYF5P13349 255 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 IL2RBP14784 551 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 DDCP20711 480 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 SERPINB3P29508 390 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 CTXN1P60606 82 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 DUSP2Q05923 314 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 SP140Q13342 867 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 TBR1Q16650 682 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 APOA5Q6Q788 366 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 ZNF572Q7Z3I7 529 aaPredicted RBP5.7□□□□□ -1.5
CD44-220ENST00000525688 PDILTQ8N807 584 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 C1orf131Q8NDD1 294 aaKnown RBP5.7□□□□□ -1.5
CD44-220ENST00000525688 SLC35A4Q96G79 324 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 APIPQ96GX9 242 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 TNIP3Q96KP6 325 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 MYD88Q99836 296 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 VRK1Q99986 396 aaPredicted RBP5.7□□□□□ -1.5
CD44-220ENST00000525688 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.7□□□□□ -1.5
CD44-220ENST00000525688 WDCPQ9H6R7 721 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 ZMAT3Q9HA38 289 aaKnown RBP5.7□□□□□ -1.5
CD44-220ENST00000525688 NLRC4Q9NPP4 1024 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 TMEM140Q9NV12 185 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 PTPRGP23470 1445 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 KIF21BO75037 1637 aa5.7□□□□□ -1.5
CD44-220ENST00000525688 ATRNL1Q5VV63 1379 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 NT5C1B-RDH14C9J2C7 533 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 H3BUI4 141 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ARHGAP6O43182 974 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 TEX33O43247 280 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 GPR32O75388 356 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 FARP2O94887 1054 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 RRADP55042 308 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 BPIFB4P59827 614 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ATP2C1P98194 919 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 IFIT5Q13325 482 aaKnown RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 TMEM95Q3KNT9 176 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 FAM47AQ5JRC9 791 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 CCDC174Q6PII3 467 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 GADL1Q6ZQY3 521 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 PDZD4Q76G19 769 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 ZNF761Q86XN6 746 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 FAM186BQ8IYM0 893 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ZDHHC14Q8IZN3 488 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 PAF1Q8N7H5 531 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 PARD3BQ8TEW8 1205 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 PHKBQ93100 1093 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 RAB24Q969Q5 203 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 PGBD4Q96DM1 585 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 LCORQ96JN0 433 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 SENP6Q9GZR1 1112 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 ZHX3Q9H4I2 956 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ARMT1Q9H993 441 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ABCF2Q9UG63 623 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 AJAP1Q9UKB5 411 aaPredicted RBP5.69□□□□□ -1.5
CD44-220ENST00000525688 TPCN1Q9ULQ1 816 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ZDHHC9Q9Y397 364 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 KIAA0556O60303 1618 aa5.69□□□□□ -1.5
CD44-220ENST00000525688 ADCY10Q96PN6 1610 aa5.68□□□□□ -1.5
CD44-220ENST00000525688 TBX3O15119 743 aa5.68□□□□□ -1.5
CD44-220ENST00000525688 TIMM44O43615 452 aa5.68□□□□□ -1.5
CD44-220ENST00000525688 TSPAN15O95858 294 aa5.68□□□□□ -1.5
CD44-220ENST00000525688 ALOX15P16050 662 aaPredicted RBP5.68□□□□□ -1.5
CD44-220ENST00000525688 ZKSCAN1P17029 563 aaPredicted RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms