RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 IL1R1P14778 569 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 RFX1P22670 979 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 RHBDL3P58872 404 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 TAF11Q15544 211 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 APOBEC3HQ6NTF7 200 aaKnown RBP12.4□□□□□ -0.43
SYNPO-204ENST00000519664 AGR3Q8TD06 166 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 GBP5Q96PP8 586 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 LRRC37BQ96QE4 947 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 CFAP69A5D8W1 941 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 KRT37O76014 449 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 HNRNPH1P31943 449 aaKnown RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 NOP14P78316 857 aaKnown RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SEPT6Q14141 434 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 TKFCQ3LXA3 575 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SYN2Q92777 582 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 MKNK1Q9BUB5 465 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 IKZF4Q9H2S9 585 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 ELP3Q9H9T3 547 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 FBXO40Q9UH90 709 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 PRKCBP05771 671 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 DDR1Q08345 913 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 EMC2Q15006 297 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 CYP4A22Q5TCH4 519 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 TWF2Q6IBS0 349 aaKnown RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 CCDC117Q8IWD4 279 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 HOMEZQ8IX15 550 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SPDL1Q96EA4 605 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 FGFR1OP2Q9NVK5 253 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 HAUS2Q9NVX0 235 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SUCLA2Q9P2R7 463 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 FZD1Q9UP38 647 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 AGAP1Q9UPQ3 857 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 PCDHB2Q9Y5E7 798 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 IQANK1A0A1B0GTG1 560 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 XPOTO43592 962 aaKnown RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 GMNNO75496 209 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 TFDP2Q14188 446 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SPOUT1Q5T280 376 aaKnown RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 RASIP1Q5U651 963 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SPOPLQ6IQ16 392 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 SLC47A2Q86VL8 602 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 LPAR1Q92633 364 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 CYFIP2Q96F07 1278 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 AP5M1Q9H0R1 490 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 VPS11Q9H270 941 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 KLC4Q9NSK0 619 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 UVRAGQ9P2Y5 699 aa12.39□□□□□ -0.43
SYNPO-204ENST00000519664 GOLGA4Q13439 2230 aaKnown RBP12.39□□□□□ -0.43
SYNPO-204ENST00000519664 EIF3DO15371 548 aaKnown RBP eCLIP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 APRTP07741 180 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 KRT10P13645 584 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 CAP2P40123 477 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 DEFB132Q7Z7B7 95 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 SUGP1Q8IWZ8 645 aaKnown RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 RYBPQ8N488 228 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 KIF2BQ8N4N8 673 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 KIF12Q96FN5 646 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TSC22D3Q99576 134 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 MOV10L1Q9BXT6 1211 aaKnown RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TRIM55Q9BYV6 548 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 MYOZ2Q9NPC6 264 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TXLNGQ9NUQ3 528 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TBX20Q9UMR3 447 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 PHKA2P46019 1235 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 ITGA8P53708 1063 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 MMEL1Q495T6 779 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 ENOSF1Q7L5Y1 443 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 HAS1Q92839 578 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 SLC35C1Q96A29 364 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 XPO6Q96QU8 1125 aaKnown RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 FAM167BQ9BTA0 163 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 KLC2Q9H0B6 622 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 ASNSD1Q9NWL6 643 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 GGA3Q9NZ52 723 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 KLHL8Q9P2G9 620 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TLK1Q9UKI8 766 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 SNX9Q9Y5X1 595 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TMEM120BA0PK00 339 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 F8VZ95 297 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 GTF2H1P32780 548 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 GMPSP49915 693 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 NME3Q13232 169 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 HIF1AQ16665 826 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 IRF2BP1Q8IU81 584 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 CREG2Q8IUH2 290 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 CERS5Q8N5B7 392 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 GABPB2Q8TAK5 448 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 CARD9Q9H257 536 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 PPP1R9AQ9ULJ8 1098 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 TPX2Q9ULW0 747 aaKnown RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 A8MXQ7 604 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 GYG2O15488 501 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 SLITRK3O94933 977 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 PDGFRBP09619 1106 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 ABCD1P33897 745 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 GARSP41250 739 aaKnown RBP12.38□□□□□ -0.43
SYNPO-204ENST00000519664 NPTX2P47972 431 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 KCNT1Q5JUK3 1230 aa12.38□□□□□ -0.43
SYNPO-204ENST00000519664 DSTYKQ6XUX3 929 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms