RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 KIAA1522Q9P206 1035 aaPredicted RBP0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 POGKQ9P215 609 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 NPFFR2Q9Y5X5 522 aa0.11□□□□□ -2.39
RNU6-539P-201ENST00000516665 CACNA1FO60840 1977 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 A0A1B0GTW7 788 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 ZNF500O60304 480 aaPredicted RBP0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 GRK2P25098 689 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 GNA15P30679 374 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 GRK3P35626 688 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 ST13P50502 369 aaKnown RBP0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 SOX8P57073 446 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 HERVK_113P62684 666 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 UBXN2BQ14CS0 331 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 SEC23AQ15436 765 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 TAF1CQ15572 869 aaPredicted RBP0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 NBPF8Q3BBV2 869 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 TSHZ1Q6ZSZ6 1077 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 RELL1Q8IUW5 271 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 BVESQ8NE79 360 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 OR5M3Q8NGP4 307 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 BTN2A2Q8WVV5 523 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 KLHL6Q8WZ60 621 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 MIB2Q96AX9 1013 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 C1orf159Q96HA4 380 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 WDR92Q96MX6 357 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 SCRT2Q9NQ03 307 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 INTS7Q9NVH2 962 aaKnown RBP0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 DNAI1Q9UI46 699 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 SRPK3Q9UPE1 567 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 CLCA2Q9UQC9 943 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 AK5Q9Y6K8 562 aa0.1□□□□□ -2.39
RNU6-539P-201ENST00000516665 PRAMEF22A3QJZ6 481 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 CARNS1A5YM72 827 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 FAM83GA6ND36 823 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNF213O14771 459 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 PROM1O43490 865 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 KRTAP1-4P0C5Y4 121 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 PIM1P11309 404 aaPredicted RBP0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 HSP90B1P14625 803 aaKnown RBP0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 FGFR4P22455 802 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 GUCY2CP25092 1073 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNF165P49910 485 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 DLX5P56178 289 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 FLIIQ13045 1269 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 EIF4EBP2Q13542 120 aaPredicted RBP0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 GEN1Q17RS7 908 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNF718Q3SXZ3 478 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 TSHZ3Q63HK5 1081 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 EFCAB12Q6NXP0 572 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 POMZP3Q6PJE2 187 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 MAMDC2Q7Z304 686 aaPredicted RBP0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 CHSY1Q86X52 802 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 FAM43AQ8N2R8 423 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 ASB15Q8WXK1 588 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 PBXIP1Q96AQ6 731 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 FRMD6Q96NE9 622 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 TM9SF2Q99805 663 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 RSRP1Q9BUV0 290 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 SENP6Q9GZR1 1112 aaPredicted RBP0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 MYLK2Q9H1R3 596 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 RPS10P5Q9NQ39 176 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNRF3Q9ULT6 936 aa0.09□□□□□ -2.4
RNU6-539P-201ENST00000516665 AATKQ6ZMQ8 1374 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 VWC2LB2RUY7 222 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 PYCARD-AS1I3L0S3 204 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 IGLV2-11P01706 119 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 CHRM2P08172 466 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 FGF2P09038 288 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 CFC1BP0CG36 223 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 CFC1P0CG37 223 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 MGAT1P26572 445 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 IL1R2P27930 398 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 ARRB2P32121 409 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 ME1P48163 572 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 ENTPD1P49961 510 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 CCT8P50990 548 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 ATP12AP54707 1039 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 IRX6P78412 446 aaPredicted RBP0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 HSD11B2P80365 405 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 LTBQ06643 244 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 IZUMO4Q1ZYL8 232 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNF484Q5JVG2 852 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 USP17L6PQ6QN14 398 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 LBX2Q6XYB7 198 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 RTL10Q7L3V2 364 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 SLC34A3Q8N130 599 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNF398Q8TD17 642 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 PHACTR3Q96KR7 559 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 CCDC177Q9NQR7 707 aaPredicted RBP0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 KCNE5Q9UJ90 142 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 SCAF8Q9UPN6 1271 aaKnown RBP0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 SUPT16HQ9Y5B9 1047 aaKnown RBP0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 PCDHGB1Q9Y5G3 927 aa0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 FBN1P35555 2871 aaKnown RBP0.08□□□□□ -2.4
RNU6-539P-201ENST00000516665 WDR27A2RRH5 827 aa0.07□□□□□ -2.4
RNU6-539P-201ENST00000516665 RASSF10A6NK89 507 aa0.07□□□□□ -2.4
RNU6-539P-201ENST00000516665 TRAFD1O14545 582 aaPredicted RBP0.07□□□□□ -2.4
RNU6-539P-201ENST00000516665 NRP1O14786 923 aa0.07□□□□□ -2.4
RNU6-539P-201ENST00000516665 DAPK3O43293 454 aa0.07□□□□□ -2.4
RNU6-539P-201ENST00000516665 TULP3O75386 442 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms