RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 GATAD2AQ86YP4 633 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 NACC1Q96RE7 527 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 HTATIP2Q9BUP3 242 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TAF1DQ9H5J8 278 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 NXF1Q9UBU9 619 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 PRDM4Q9UKN5 801 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 MAP2P11137 1827 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 RGS5O15539 181 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 TFRCP02786 760 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 POTEIP0CG38 1075 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PHKG2P15735 406 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CD58P19256 250 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SCNN1DP51172 638 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 LRRC63Q05C16 580 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SPICE1Q8N0Z3 855 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 RYBPQ8N488 228 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ZBTB38Q8NAP3 1195 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PI4K2BQ8TCG2 481 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 DEPDC1BQ8WUY9 529 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CYGBQ8WWM9 190 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 AGBL1Q96MI9 1066 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PIGSQ96S52 555 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CCDC28BQ9BUN5 200 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SMARCAD1Q9H4L7 1026 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PRG3Q9Y2Y8 225 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CDC42BPGQ6DT37 1551 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 F8VZ95 297 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 F8W8V4 182 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ZSCAN9O15535 394 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PLA2G4BP0C869 781 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 HUNKP57058 714 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 C21orf59P57076 290 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 KDSRQ06136 332 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 LAMC2Q13753 1193 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 MYBPC2Q14324 1141 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM43BQ6ZT52 329 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 KIF2BQ8N4N8 673 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SPATA4Q8NEY3 305 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ABHD8Q96I13 439 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PALLDQ8WX93 1383 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 UBE4BO95155 1302 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SALL3Q9BXA9 1300 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 TNFRSF21O75509 655 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PRLP01236 227 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 GAP43P17677 238 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SLC9A1P19634 815 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 BTDP43251 543 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CACNA2D1P54289 1103 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CHRNDQ07001 517 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 STK4Q13043 487 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 RASGRF1Q13972 1273 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ARMC4Q5T2S8 1044 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 TRIM74Q86UV6 250 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 TRIM73Q86UV7 250 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 UNC45BQ8IWX7 931 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 DHX40Q8IX18 779 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 RHOT2Q8IXI1 618 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 NLRP4Q96MN2 994 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 LRRC1Q9BTT6 524 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 FBXO9Q9UK97 447 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CYP2D7A0A087X1C5 515 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 TMEM247A6NEH6 219 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 TCP11X1B4DZS4 312 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 KCNQ2O43526 872 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 AKAP10O43572 662 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 FOSP01100 380 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 GYS1P13807 737 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 PRCPP42785 496 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 RC3H1Q5TC82 1133 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ERP27Q96DN0 273 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 AMNQ9BXJ7 453 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM192AQ9GZU8 254 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 HOXC10Q9NYD6 342 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF804BA4D1E1 1349 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 KLHL18O94889 574 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SGSM1Q2NKQ1 1148 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 USP17L2Q6R6M4 530 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 KCTD1Q719H9 257 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 CLEC4FQ8N1N0 589 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 SYNE4Q8N205 404 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 DPF2Q92785 391 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 INO80BQ9C086 356 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ANAPC7Q9UJX3 599 aa9.18□□□□□ -0.94
LIMCH1-218ENST00000513024 ZBED1O96006 694 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TCF3P15923 654 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ADD2P35612 726 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 NUP62P37198 522 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TFAMQ00059 246 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 YWHAHQ04917 246 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TP53BP2Q13625 1128 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 MAPRE1Q15691 268 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 C7orf31Q8N865 590 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TTC25Q96NG3 672 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ACCSQ96QU6 501 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 EPS8L2Q9H6S3 715 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CD209Q9NNX6 404 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 RICTORQ6R327 1708 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 SPATA31A3Q5VYP0 1347 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ANKARQ7Z5J8 1434 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CCDC195A0A1B0GUA6 201 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms