RNA–Protein interactions for RNA: ENST00000511001.2

CHFR-208, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 892 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-208	ENST00000511001	USP28	Q96RU2	1077 aa		13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	TTPAL	Q9BTX7	342 aa		13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	RHOBTB2	Q9BYZ6	727 aa		13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	CNTN3	Q9P232	1028 aa		13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	LARS	Q9P2J5	1176 aa	Known RBP	13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	KCNG1	Q9UIX4	513 aa		13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	UST	Q9Y2C2	406 aa		13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	SRPRB	Q9Y5M8	271 aa	Known RBP	13.19	□□□□□ -0.3
CHFR-208	ENST00000511001	CCDC195	A0A1B0GUA6	201 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	TMEM221	A6NGB7	291 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001		M0R296	226 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	FGFR3	P22607	806 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	BRCC3	P46736	316 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	YARS	P54577	528 aa	Known RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	MCL1	Q07820	350 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	ELAVL2	Q12926	359 aa	Known RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	STRN3	Q13033	797 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	PSMD5	Q16401	504 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	SLC10A6	Q3KNW5	377 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	DCLRE1A	Q6PJP8	1040 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	HAUS6	Q7Z4H7	955 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	TDRD5	Q8NAT2	981 aa	Known RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	LARP4B	Q92615	738 aa	Known RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	SNX21	Q969T3	373 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	ASIC4	Q96FT7	647 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	UROC1	Q96N76	676 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	TCHP	Q9BT92	498 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	PLEKHA4	Q9H4M7	779 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	ANKFY1	Q9P2R3	1169 aa		13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-208	ENST00000511001	SCN1A	P35498	2009 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	SPDYE4	A6NLX3	237 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001		H0YCG3	227 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001		I3L4J1	428 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	STX6	O43752	255 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	N4BP1	O75113	896 aa	Known RBP	13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	B3GAT3	O94766	335 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	FAM13A	O94988	1023 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	PIGR	P01833	764 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	ASGR2	P07307	311 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	TKT	P29401	623 aa	Known RBP	13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	DDIT3	P35638	169 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	CREM	Q03060	361 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	CEBPZ	Q03701	1054 aa	Known RBP	13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	SIGLEC14	Q08ET2	396 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	CYP26C1	Q6V0L0	522 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	CCDC149	Q6ZUS6	474 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	CEP57	Q86XR8	500 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	TMEM130	Q8N3G9	435 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	MYCT1	Q8N699	235 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	KREMEN2	Q8NCW0	462 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	C18orf25	Q96B23	403 aa	Predicted RBP	13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	DDX27	Q96GQ7	796 aa	Known RBP	13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	SMOC2	Q9H3U7	446 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	PARVG	Q9HBI0	331 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	MTRR	Q9UBK8	725 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	LIMD1	Q9UGP4	676 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	DPP7	Q9UHL4	492 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	FBXW11	Q9UKB1	542 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001	USP34	Q70CQ2	3546 aa		13.17	□□□□□ -0.3
CHFR-208	ENST00000511001		K7ENM7	598 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	PODXL	O00592	558 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	TRAK2	O60296	914 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	FAM189A1	O60320	539 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	ZMYND10	O75800	440 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	NMT1	P30419	496 aa	Known RBP	13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	TNFSF9	P41273	254 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	SLC39A14	Q15043	492 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	SLC39A4	Q6P5W5	647 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	PLCD3	Q8N3E9	789 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	RASSF8	Q8NHQ8	419 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	SMG7	Q92540	1137 aa	Known RBP	13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	KCNH6	Q9H252	994 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	WDR6	Q9NNW5	1121 aa	Known RBP	13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	SLC38A7	Q9NVC3	462 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	ZDHHC7	Q9NXF8	308 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	STK17A	Q9UEE5	414 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	TBX20	Q9UMR3	447 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	SORCS3	Q9UPU3	1222 aa		13.16	□□□□□ -0.3
CHFR-208	ENST00000511001	CLUH	O75153	1309 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	TCHH	Q07283	1943 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001		A0A087X0B3	334 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	TTC26	A0AVF1	554 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	CLDN3	O15551	220 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	CXCL8	P10145	99 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	NASP	P49321	788 aa	Predicted RBP	13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	GTF2B	Q00403	316 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	RAB33A	Q14088	237 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	ZBTB6	Q15916	424 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	ZBTB41	Q5SVQ8	909 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	PDXDC1	Q6P996	788 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	ELMSAN1	Q6PJG2	1045 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	OTOP3	Q7RTS5	596 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	PBXIP1	Q96AQ6	731 aa		13.15	□□□□□ -0.3
CHFR-208	ENST00000511001	DNAJC19	Q96DA6	116 aa		13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms