RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 EPB41P11171 864 aaKnown RBP32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 TMEM132DQ14C87 1099 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 PSMD6Q15008 389 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 NAB2Q15742 525 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 EFCAB13Q8IY85 973 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 CCDC127Q96BQ5 260 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 MFSD14AQ96MC6 490 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 NKX2-4Q9H2Z4 354 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 CWH43Q9H720 699 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 DDHD2O94830 711 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 SPOUT1Q5T280 376 aaKnown RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 C18orf25Q96B23 403 aaPredicted RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 FAM193BQ96PV7 902 aaPredicted RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 SLC38A7Q9NVC3 462 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 TUBGCP4Q9UGJ1 667 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 DLATP10515 647 aaKnown RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 DSC1Q08554 894 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 TPD52L1Q16890 204 aaPredicted RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 PLEKHO2Q8TD55 490 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 SRRTQ9BXP5 876 aaKnown RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 NAT10Q9H0A0 1025 aaKnown RBP32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 NRDE2Q9H7Z3 1164 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 DNAJB4Q9UDY4 337 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 DERAQ9Y315 318 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 C2CD2Q9Y426 696 aa32.11■■■□□ 2.73
LIMCH1-211ENST00000509638 PTPRJQ12913 1337 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 LINC00271P0C7V0 271 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 SOX4Q06945 474 aaPredicted RBP32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 TUSC3Q13454 348 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 INTS8Q75QN2 995 aaKnown RBP32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 FAM84AQ96KN4 292 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 FNBP1Q96RU3 617 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 GOLGA2P5Q9HBQ8 144 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 CACNG4Q9UBN1 327 aa32.1■■■□□ 2.73
LIMCH1-211ENST00000509638 CASTOR2A6NHX0 329 aa32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 PBX3P40426 434 aa32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 SURF1Q15526 300 aa32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 LMBRD2Q68DH5 695 aaPredicted RBP32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 COLGALT2Q8IYK4 626 aa32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 CLP1Q92989 425 aaKnown RBP32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 TSPAN18Q96SJ8 248 aa32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 TRANK1O15050 2925 aa32.09■■■□□ 2.73
LIMCH1-211ENST00000509638 FGFR1OPO95684 399 aaKnown RBP32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 TFAMQ00059 246 aaKnown RBP32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 PPP2R2DQ66LE6 453 aa32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 SPRED2Q7Z698 418 aa32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 TIFAQ96CG3 184 aa32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 CGRRF1Q99675 332 aa32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 UBQLN1Q9UMX0 589 aaKnown RBP32.08■■■□□ 2.73
LIMCH1-211ENST00000509638 KRT13P13646 458 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 LAG3P18627 525 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 TAP1Q03518 808 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 BFSP1Q12934 665 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 ZBTB6Q15916 424 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 CCDC40Q4G0X9 1142 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 SPATA1Q5VX52 437 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 FILIP1Q7Z7B0 1213 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 NT5DC4Q86YG4 428 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 WDR49Q8IV35 697 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 TMEM130Q8N3G9 435 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 ENOX1Q8TC92 643 aaKnown RBP32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 PARD3BQ8TEW8 1205 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 POP1Q99575 1024 aaKnown RBP32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 NFE2L3Q9Y4A8 694 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 LRRIQ3A6PVS8 624 aaPredicted RBP32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 XPOTO43592 962 aaKnown RBP32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 GUCY2FP51841 1108 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 MYL5Q02045 173 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 BORCS6Q96GS4 357 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 MTMR12Q9C0I1 747 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 SLC28A3Q9HAS3 691 aa32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 ARMCX3Q9UH62 379 aaPredicted RBP32.07■■■□□ 2.72
LIMCH1-211ENST00000509638 SZT2Q5T011 3432 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 TNNI1P19237 187 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 VAMP7P51809 220 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 BCAR1P56945 870 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 DLG4P78352 724 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 AOPEPQ8N6M6 819 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 COLGALT1Q8NBJ5 622 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 BEST2Q8NFU1 509 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 TMC2Q8TDI7 906 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 BPIFA3Q9BQP9 254 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 PAAF1Q9BRP4 392 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 C17orf80Q9BSJ5 609 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 MTUS1Q9ULD2 1270 aa32.06■■■□□ 2.72
LIMCH1-211ENST00000509638 TMEM191BP0C7N4 346 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 TRIM49P0CI25 452 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 TRIM49CP0CI26 452 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 CTNNB1P35222 781 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 OR1G1P47890 313 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 SLC11A1P49279 550 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 ZNF165P49910 485 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 USP37Q86T82 979 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 OR5B17Q8NGF7 314 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 RABGGTAQ92696 567 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 CNOT6LQ96LI5 555 aaKnown RBP32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 ZNF558Q96NG5 402 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 TMEM175Q9BSA9 504 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 INTS13Q9NVM9 706 aa32.05■■■□□ 2.72
LIMCH1-211ENST00000509638 SOX1O00570 391 aaPredicted RBP32.04■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms