RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CYB5RLQ6IPT4 315 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 MIS18BP1Q6P0N0 1132 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 OR8H2Q8N162 312 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 KLHL23Q8NBE8 558 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 PDCD6IPQ8WUM4 868 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 LRRC1Q9BTT6 524 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 STK39Q9UEW8 545 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 VAV3Q9UKW4 847 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 SLC26A4O43511 780 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 ECM2O94769 699 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 FKBP9O95302 570 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 ABL1P00519 1130 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 MAGEA10P43363 369 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 PDZK1Q5T2W1 519 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 CRELD2Q6UXH1 353 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 FKBP9P1Q75LS8 142 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 PRPF39Q86UA1 669 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 LCORLQ8N3X6 602 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 PPHLN1Q8NEY8 458 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 MIEF2Q96C03 454 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 FOPNLQ96NB1 174 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 CDCA7Q9BWT1 371 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 BSDC1Q9NW68 430 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 SF3B1O75533 1304 aaKnown RBP eCLIP11.78□□□□□ -0.521e-8■■■■■ 160.4
LIMCH1-208ENST00000508501 MYL2P10916 166 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 KRT33BQ14525 404 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 MAGEB18Q96M61 343 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 WDR70Q9NW82 654 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 WDR35Q9P2L0 1181 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 ZNF862O60290 1169 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 IL2RBP14784 551 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 PLCG1P19174 1290 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 GJA8P48165 433 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 EIF6P56537 245 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 ARPC4P59998 168 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 C6orf10Q5SRN2 563 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 SMYD4Q8IYR2 804 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 BTN2A2Q8WVV5 523 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 S100ZQ8WXG8 99 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 PDCD10Q9BUL8 212 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 FRMD8P1Q9BZ68 369 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 UNC45AQ9H3U1 944 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 RPL26L1Q9UNX3 145 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 ESYT3A0FGR9 886 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 AIM2O14862 343 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 IDH3BO43837 385 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 CENPCQ03188 943 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 RFX8Q6ZV50 586 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 GSPT2Q8IYD1 628 aaKnown RBP11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 TCAIMQ8N3R3 496 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 C17orf50Q8WW18 174 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 MPP4Q96JB8 637 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 RBM15Q96T37 977 aaKnown RBP eCLIP11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 NUP85Q9BW27 656 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 SERHL2Q9H4I8 314 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 SMARCAD1Q9H4L7 1026 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 ZWILCHQ9H900 591 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 COPRSQ9NQ92 184 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 SERHLQ9NQF3 203 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 BTBD3Q9Y2F9 522 aa11.77□□□□□ -0.52
LIMCH1-208ENST00000508501 KDM5DQ9BY66 1539 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 ARHGEF12Q9NZN5 1544 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 KIAA0391O15091 583 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 GUCY1B2O75343 617 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 ATP6V1G2O95670 118 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 SARSP49591 514 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 CCNJLQ8IV13 435 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 KIAA0825Q8IV33 1275 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 AHI1Q8N157 1196 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 XXYLT1Q8NBI6 393 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 HSPH1Q92598 858 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 VPS33AQ96AX1 596 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 TUFT1Q9NNX1 390 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 DMAP1Q9NPF5 467 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 KRT84Q9NSB2 600 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 SLC9A2Q9UBY0 812 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 PRAG1Q86YV5 1406 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 CYTH3O43739 400 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 CIAO1O76071 339 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 PGM3O95394 542 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 ATP1A1P05023 1023 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 SLC34A1Q06495 639 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 KCNB1Q14721 858 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 TMEM63BQ5T3F8 832 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 TTC39BQ5VTQ0 682 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 LRRC8DQ7L1W4 858 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 G2E3Q7L622 706 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 SZRD1Q7Z422 152 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 NLRP10Q86W26 655 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 POP5Q969H6 163 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 ZNF577Q9BSK1 485 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 CACNA2D2Q9NY47 1150 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 GGA2Q9UJY4 613 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 MYO1GB0I1T2 1018 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 UBAP1LF5GYI3 381 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 STX11O75558 287 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 PECAM1P16284 738 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 ARSEP51690 589 aa11.77□□□□□ -0.53
LIMCH1-208ENST00000508501 TNFAIP2Q03169 654 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms