RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ACBD5Q5T8D3 534 aaPredicted RBP5.45□□□□□ -1.54
NUP54-206ENST00000508465 VASNQ6EMK4 673 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 OTUD7BQ6GQQ9 843 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 GADL1Q6ZQY3 521 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 Q6ZUG5 572 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 CCDC103Q8IW40 242 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 RCBTB1Q8NDN9 531 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 NUDT10Q8NFP7 164 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 CD99L2Q8TCZ2 262 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.45□□□□□ -1.54
NUP54-206ENST00000508465 BTN2A2Q8WVV5 523 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 NUDT11Q96G61 164 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 ABHD8Q96I13 439 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 SHDQ96IW2 340 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 GNRHR2Q96P88 292 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 ADOQ96SZ5 270 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 CSRNP2Q9H175 543 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 ARMT1Q9H993 441 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 DLL4Q9NR61 685 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 ECHDC1Q9NTX5 307 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 CLDND1Q9NY35 253 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 TMEFF2Q9UIK5 374 aaPredicted RBP5.45□□□□□ -1.54
NUP54-206ENST00000508465 MYO5AQ9Y4I1 1855 aaKnown RBP5.45□□□□□ -1.54
NUP54-206ENST00000508465 FLT1P17948 1338 aa5.45□□□□□ -1.54
NUP54-206ENST00000508465 AKAP11Q9UKA4 1901 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 ATRNL1Q5VV63 1379 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 HTTP42858 3142 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 ECM29Q5VYK3 1845 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 CYP2D7A0A087X1C5 515 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 PDHXO00330 501 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 CTNND1O60716 968 aaKnown RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 FBXO21O94952 628 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 MBD4O95243 580 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 CNOT4O95628 575 aaKnown RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 LTBRP36941 435 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 KCNJ6P48051 423 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 PPATQ06203 517 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 CYP4F3Q08477 520 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 SPP2Q13103 211 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 TTF1Q15361 905 aaPredicted RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 SMAD2Q15796 467 aaKnown RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 TCTN3Q6NUS6 607 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 RNF207Q6ZRF8 634 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 FOXP4Q8IVH2 680 aaPredicted RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 SCYL3Q8IZE3 742 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 LCORLQ8N3X6 602 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 SDR42E1Q8WUS8 393 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 ARAP2Q8WZ64 1704 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 LRRC37BQ96QE4 947 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 RIOK1Q9BRS2 568 aaKnown RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 PI4KBQ9UBF8 816 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 CPA4Q9UI42 421 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 ZFR2Q9UPR6 939 aaKnown RBP5.44□□□□□ -1.54
NUP54-206ENST00000508465 AFG3L2Q9Y4W6 797 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 SLC4A7Q9Y6M7 1214 aa5.44□□□□□ -1.54
NUP54-206ENST00000508465 RFX7Q2KHR2 1363 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 CXCL11O14625 94 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 FOXS1O43638 330 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 KLHL18O94889 574 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 SCG5P05408 212 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 MCM7P33993 719 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 ADD2P35612 726 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 NASPP49321 788 aaPredicted RBP5.43□□□□□ -1.54
NUP54-206ENST00000508465 SP3Q02447 781 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 TESK1Q15569 626 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 ZNF568Q3ZCX4 644 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 USP39Q53GS9 565 aaKnown RBP5.43□□□□□ -1.54
NUP54-206ENST00000508465 TREML2Q5T2D2 321 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 CTU1Q7Z7A3 348 aaKnown RBP5.43□□□□□ -1.54
NUP54-206ENST00000508465 PPIL6Q8IXY8 311 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 CHFRQ96EP1 664 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 ZNF503Q96F45 646 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 DYNLL2Q96FJ2 89 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 GPATCH3Q96I76 525 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 AJUBAQ96IF1 538 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 CRNKL1Q9BZJ0 848 aaKnown RBP5.43□□□□□ -1.54
NUP54-206ENST00000508465 ARHGAP39Q9C0H5 1083 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 PUS7LQ9H0K6 701 aaKnown RBP5.43□□□□□ -1.54
NUP54-206ENST00000508465 DNAJC18Q9H819 358 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 MCM9Q9NXL9 1143 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 WASF3Q9UPY6 502 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 TRIM17Q9Y577 477 aa5.43□□□□□ -1.54
NUP54-206ENST00000508465 RPAP1Q9BWH6 1393 aaPredicted RBP5.42□□□□□ -1.54
NUP54-206ENST00000508465 THSD7BQ9C0I4 1608 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 M0R2C6 588 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 ARNTLO00327 626 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 RNF113AO15541 343 aaKnown RBP5.42□□□□□ -1.54
NUP54-206ENST00000508465 ZNF202O95125 648 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 GH2P01242 217 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 HLA-DOAP06340 250 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 COL6A1P12109 1028 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 COMTP21964 271 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 CTGFP29279 349 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 HMGCS2P54868 508 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 HDAC1Q13547 482 aaPredicted RBP5.42□□□□□ -1.54
NUP54-206ENST00000508465 SV2CQ496J9 727 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 CERKLQ49MI3 558 aaPredicted RBP5.42□□□□□ -1.54
NUP54-206ENST00000508465 FASTKD5Q7L8L6 764 aaKnown RBP5.42□□□□□ -1.54
NUP54-206ENST00000508465 OTOP1Q7RTM1 612 aa5.42□□□□□ -1.54
NUP54-206ENST00000508465 ANKRD23Q86SG2 305 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms