RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RINT1Q6NUQ1 792 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 RFWD3Q6PCD5 774 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 NRG4Q8WWG1 115 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 UBE2TQ9NPD8 197 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 TAF1LQ8IZX4 1826 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 A0A1W2PRG0 241 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 SPAG7O75391 227 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 ABHD2P08910 425 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 SLC16A2P36021 539 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 RCN2Q14257 317 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 TRIP13Q15645 432 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 PRR16Q569H4 304 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 RBM26Q5T8P6 1007 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 TBC1D9BQ66K14 1250 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 PRUNE1Q86TP1 453 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 CCDC125Q86Z20 511 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 CLEC10AQ8IUN9 316 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 GRK7Q8WTQ7 553 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 ITFG2Q969R8 447 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 VTI1AQ96AJ9 217 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 LENG9Q96B70 501 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 AGPAT3Q9NRZ7 376 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 RABGAP1Q9Y3P9 1069 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 NEU2Q9Y3R4 380 aa18.2■□□□□ 0.5
SQSTM1-211ENST00000506690 C2CD2LO14523 706 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 GAS8O95995 478 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 GCAP28676 217 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 SSR1P43307 286 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 CYP2J2P51589 502 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 CDR2Q01850 454 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 CYP4A11Q02928 519 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 BFSP1Q12934 665 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 LLGL1Q15334 1064 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 Q4G0T1 1027 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 SCG3Q8WXD2 468 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 ATG4AQ8WYN0 398 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 EPAS1Q99814 870 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 TIPINQ9BVW5 301 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 PLVAPQ9BX97 442 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 CADM1Q9BY67 442 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 ZFP69BQ9UJL9 534 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 ATP9AO75110 1047 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 ADCY8P40145 1251 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 RHBDL3P58872 404 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 TBC1D25Q3MII6 688 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 GRIPAP1Q4V328 841 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 DSTYKQ6XUX3 929 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 HS2ST1Q7LGA3 356 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 ARHGEF19Q8IW93 802 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 MYCT1Q8N699 235 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 EZH1Q92800 747 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 GATA6Q92908 595 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 C9orf72Q96LT7 481 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 FGD4Q96M96 766 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 FIZ1Q96SL8 496 aa18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 NOCTQ9UK39 431 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-211ENST00000506690 FAM13AO94988 1023 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 AKR1B1P15121 316 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 POLE2P56282 527 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 SESN3P58005 492 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 ARHGAP4P98171 946 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 CUL3Q13618 768 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 RCN1Q15293 331 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 CCDC6Q16204 474 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 GPATCH4Q5T3I0 446 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 NLRP9Q7RTR0 991 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 CLNKQ7Z7G1 428 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 KSR1Q8IVT5 923 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 EPS8L1Q8TE68 723 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 POLR3CQ9BUI4 534 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 DCLK3Q9C098 648 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 PCMTD2Q9NV79 361 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 NUMBLQ9Y6R0 609 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 UBE4BO95155 1302 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 THSD7AQ9UPZ6 1657 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 TJP3O95049 919 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 RRM1P23921 792 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 OTOAQ7RTW8 1153 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 TDRPQ86YL5 185 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 ZNF398Q8TD17 642 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 GJD4Q96KN9 370 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 UVRAGQ9P2Y5 699 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 GTF3C4Q9UKN8 822 aa18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 SMG5Q9UPR3 1016 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-211ENST00000506690 SMAPO00193 183 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 SGPL1O95470 568 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 CACNA2D1P54289 1103 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 ZNF720Q7Z2F6 126 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 NOP9Q86U38 636 aaKnown RBP18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 KIAA0825Q8IV33 1275 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 ATL2Q8NHH9 583 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 MAIP1Q8WWC4 291 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 P2RX7Q99572 595 aaKnown RBP18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 HERPUD2Q9BSE4 406 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 TMX4Q9H1E5 349 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 TRABDQ9H4I3 376 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 KIAA1586Q9HCI6 787 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 LRRC4BQ9NT99 713 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 VAV3Q9UKW4 847 aa18.17■□□□□ 0.5
SQSTM1-211ENST00000506690 A0A1B0GVG6 124 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms