RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 DDIT3P35638 169 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 LONP1P36776 959 aaKnown RBP13.09□□□□□ -0.31
MED28-203ENST00000503945 MATR3P43243 847 aaKnown RBP eCLIP13.09□□□□□ -0.31
MED28-203ENST00000503945 CLCNKBP51801 687 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 MAPK7Q13164 816 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 CUL4AQ13619 759 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 DHX8Q14562 1220 aaKnown RBP13.09□□□□□ -0.31
MED28-203ENST00000503945 SF3A1Q15459 793 aaKnown RBP13.09□□□□□ -0.31
MED28-203ENST00000503945 NAB2Q15742 525 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 UPP1Q16831 310 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 ZNF568Q3ZCX4 644 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 GLRA4Q5JXX5 417 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 RTP2Q5QGT7 225 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 MPZL3Q6UWV2 235 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 FLCNQ8NFG4 579 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 PPP1R10Q96QC0 940 aaKnown RBP13.09□□□□□ -0.31
MED28-203ENST00000503945 CLSTN3Q9BQT9 956 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 PRKD2Q9BZL6 878 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 ZDHHC7Q9NXF8 308 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 MTCL1Q9Y4B5 1905 aaKnown RBP13.09□□□□□ -0.31
MED28-203ENST00000503945 SPTBN4Q9H254 2564 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 FAM186AA6NE01 2351 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 VPS37CA5D8V6 355 aaPredicted RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 KRT18P05783 430 aaKnown RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 SCP2P22307 547 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 GBP2P32456 591 aaPredicted RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 RPL9P32969 192 aaKnown RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 TDGQ13569 410 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 PSMD5Q16401 504 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 ARSHQ5FYA8 562 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 XKR4Q5GH76 650 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 CWF19L1Q69YN2 538 aaKnown RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 TAS1R3Q7RTX0 852 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 FRMD5Q7Z6J6 570 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 MYCT1Q8N699 235 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 TMEM161BQ8NDZ6 487 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 PIK3R5Q8WYR1 880 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 ZBTB45Q96K62 511 aaPredicted RBP13.08□□□□□ -0.32
MED28-203ENST00000503945 CDT1Q9H211 546 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 KCNK12Q9HB15 430 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.08□□□□□ -0.322e-6■■□□□ 13.3
MED28-203ENST00000503945 IGSF9Q9P2J2 1179 aa13.08□□□□□ -0.32
MED28-203ENST00000503945 NPHP3-ACAD11A0A0J9YXS1 232 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 TMEM189-UBE2V1I3L0A0 370 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 ZMYND10O75800 440 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 MAPTP10636 758 aaKnown RBP13.07□□□□□ -0.32
MED28-203ENST00000503945 HARSP12081 509 aaKnown RBP13.07□□□□□ -0.32
MED28-203ENST00000503945 KCNE1P15382 129 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 FGFR3P22607 806 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 PROZP22891 400 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 OR1D2P34982 312 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 UVSSAQ2YD98 709 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 TMEM119Q4V9L6 283 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 LIN9Q5TKA1 542 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 ZPBP2Q6X784 338 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 ANKS3Q6ZW76 656 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 HAUS6Q7Z4H7 955 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 CEP120Q8N960 986 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 BICD1Q96G01 975 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 BACH2Q9BYV9 841 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 ZHX3Q9H4I2 956 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 CCDC39Q9UFE4 941 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 ODF2LQ9ULJ1 636 aa13.07□□□□□ -0.32
MED28-203ENST00000503945 TDRD15B5MCY1 1934 aaKnown RBP13.07□□□□□ -0.32
MED28-203ENST00000503945 DOCK6Q96HP0 2047 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 NARSO43776 548 aaKnown RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 TRAK2O60296 914 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 N4BP1O75113 896 aaKnown RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 FAM13AO94988 1023 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 HNRNPA1P09651 372 aaKnown RBP eCLIP13.06□□□□□ -0.32
MED28-203ENST00000503945 AOC1P19801 751 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 SYT1P21579 422 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 CACNB1Q02641 598 aaPredicted RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 RAB33AQ14088 237 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 KYAT1Q16773 422 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 PPM1LQ5SGD2 360 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 RTL10Q7L3V2 364 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 GPBP1Q86WP2 473 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 RSAD2Q8WXG1 361 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 NKD2Q969F2 451 aaPredicted RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 NXPE3Q969Y0 559 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 ZNF707Q96C28 371 aaPredicted RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 INTS4Q96HW7 963 aaKnown RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 ZMAT2Q96NC0 199 aaKnown RBP13.06□□□□□ -0.32
MED28-203ENST00000503945 CCSER1Q9C0I3 900 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 PLEKHA5Q9HAU0 1116 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 PARVGQ9HBI0 331 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 ANKFY1Q9P2R3 1169 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 DUSP12Q9UNI6 340 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 NUB1Q9Y5A7 615 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 DOCK8Q8NF50 2099 aa13.06□□□□□ -0.32
MED28-203ENST00000503945 ARID2Q68CP9 1835 aa13.05□□□□□ -0.32
MED28-203ENST00000503945 PODXLO00592 558 aa13.05□□□□□ -0.32
MED28-203ENST00000503945 XYLBO75191 536 aa13.05□□□□□ -0.32
MED28-203ENST00000503945 PAPLNO95428 1278 aa13.05□□□□□ -0.32
MED28-203ENST00000503945 CLTAP09496 248 aa13.05□□□□□ -0.32
MED28-203ENST00000503945 IGFBP6P24592 240 aaPredicted RBP13.05□□□□□ -0.32
MED28-203ENST00000503945 MARCKSP29966 332 aaPredicted RBP13.05□□□□□ -0.32
MED28-203ENST00000503945 ABCD1P33897 745 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms