RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MTRRQ9UBK8 725 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 CDY1Q9Y6F8 540 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 FASNP49327 2511 aaKnown RBP18.26■□□□□ 0.51
VIM-208ENST00000497849 HMGB1P09429 215 aaKnown RBP18.26■□□□□ 0.51
VIM-208ENST00000497849 FGFR3P22607 806 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 LIMK1P53667 647 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 ELAVL2Q12926 359 aaKnown RBP18.26■□□□□ 0.51
VIM-208ENST00000497849 KRT32Q14532 448 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 EPHA7Q15375 998 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 IL31Q6EBC2 164 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.26■□□□□ 0.51
VIM-208ENST00000497849 IRF7Q92985 503 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 TCEAL4Q96EI5 215 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 TRMT61BQ9BVS5 477 aaKnown RBP18.26■□□□□ 0.51
VIM-208ENST00000497849 NFKBIZQ9BYH8 718 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 ZFP14Q9HCL3 533 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 TRPV5Q9NQA5 729 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 PIAS3Q9Y6X2 628 aa18.26■□□□□ 0.51
VIM-208ENST00000497849 PDCD11Q14690 1871 aaKnown RBP18.26■□□□□ 0.51
VIM-208ENST00000497849 K7ESF4 209 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 FOXD2O60548 495 aaPredicted RBP18.25■□□□□ 0.51
VIM-208ENST00000497849 PTPN2P17706 415 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 GLRA2P23416 452 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 CNR2P34972 360 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 ARL2P36404 184 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 CTTNQ14247 550 aaKnown RBP18.25■□□□□ 0.51
VIM-208ENST00000497849 INF2Q27J81 1249 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 LONP2Q86WA8 852 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 BLIDQ8IZY5 108 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 FAM160A2Q8N612 972 aaPredicted RBP18.25■□□□□ 0.51
VIM-208ENST00000497849 DYDC2Q96IM9 177 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 FAM20AQ96MK3 541 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 SH2B1Q9NRF2 756 aaPredicted RBP18.25■□□□□ 0.51
VIM-208ENST00000497849 RXFP3Q9NSD7 469 aa18.25■□□□□ 0.51
VIM-208ENST00000497849 ARHGEF37A1IGU5 675 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 THP07101 528 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 PROS1P07225 676 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 GDI1P31150 447 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 HOXC13P31276 330 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 CCR2P41597 374 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 CYP4A11Q02928 519 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 CD300LGQ6UXG3 332 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 VITQ6UXI7 678 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 SPEM1Q8N4L4 309 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 DAGLBQ8NCG7 672 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 HAS1Q92839 578 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 ASB16Q96NS5 453 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 ZSWIM4Q9H7M6 989 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 NCOA5Q9HCD5 579 aaKnown RBP18.24■□□□□ 0.51
VIM-208ENST00000497849 SNTG2Q9NY99 539 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 BACE2Q9Y5Z0 518 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 SPAG17Q6Q759 2223 aa18.24■□□□□ 0.51
VIM-208ENST00000497849 ANKRD11Q6UB99 2663 aaPredicted RBP18.23■□□□□ 0.51
VIM-208ENST00000497849 IGF2RP11717 2491 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 TRIP11Q15643 1979 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 TTLL13PA6NNM8 815 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 PAPSS2O95340 614 aaPredicted RBP18.23■□□□□ 0.51
VIM-208ENST00000497849 PSMC3P17980 439 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 CCNE1P24864 410 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 SPIRE1Q08AE8 756 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 PTGDRQ13258 359 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 SF3A2Q15428 464 aaKnown RBP18.23■□□□□ 0.51
VIM-208ENST00000497849 WDR44Q5JSH3 913 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 DDX27Q96GQ7 796 aaKnown RBP18.23■□□□□ 0.51
VIM-208ENST00000497849 ZSWIM3Q96MP5 696 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 AGXT2Q9BYV1 514 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 C2orf42Q9NWW7 574 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 NCANO14594 1321 aa18.23■□□□□ 0.51
VIM-208ENST00000497849 WDR27A2RRH5 827 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 ARNTLO00327 626 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 RECQL4O94761 1208 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 SLITRK3O94933 977 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 TKTP29401 623 aaKnown RBP18.22■□□□□ 0.51
VIM-208ENST00000497849 CCT2P78371 535 aaKnown RBP18.22■□□□□ 0.51
VIM-208ENST00000497849 AASDHQ4L235 1098 aaPredicted RBP18.22■□□□□ 0.51
VIM-208ENST00000497849 HEATR6Q6AI08 1181 aaKnown RBP18.22■□□□□ 0.51
VIM-208ENST00000497849 NCAPH2Q6IBW4 605 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 FBXL16Q8N461 479 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 CORO1BQ9BR76 489 aa18.22■□□□□ 0.51
VIM-208ENST00000497849 RBM12Q9NTZ6 932 aaKnown RBP18.22■□□□□ 0.51
VIM-208ENST00000497849 LAMA1P25391 3075 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 TMEM189-UBE2V1I3L0A0 370 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 DGAT1O75907 488 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 MICAL2O94851 1124 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 ABLIM3O94929 683 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 LRG1P02750 347 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 VIPR2P41587 438 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 ROR1Q01973 937 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 CCDC6Q16204 474 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 PPP4R3AQ6IN85 833 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 PPP4R3CPQ6ZMV5 832 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 Q6ZS52 159 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 TPH2Q8IWU9 490 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 ZNF461Q8TAF7 563 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 SMARCD2Q92925 531 aa18.21■□□□□ 0.51
VIM-208ENST00000497849 C1QTNF9BB2RNN3 333 aa18.2■□□□□ 0.5
VIM-208ENST00000497849 I3L4J1 428 aa18.2■□□□□ 0.5
VIM-208ENST00000497849 TBX3O15119 743 aa18.2■□□□□ 0.5
VIM-208ENST00000497849 MOSPD3O75425 235 aa18.2■□□□□ 0.5
VIM-208ENST00000497849 C1QTNF9P0C862 333 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms