RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LINC01553A4QN01 128 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 INPPL1O15357 1258 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 SLC16A3O15427 465 aaKnown RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 KRT13P13646 458 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 KCNE1P15382 129 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 TNNI1P19237 187 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 GUCY2FP51841 1108 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 DLG4P78352 724 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 SMAD3P84022 425 aaKnown RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 POU5F1Q01860 360 aaKnown RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 SOX4Q06945 474 aaPredicted RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 PSMD6Q15008 389 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 CT47A1Q5JQC4 288 aaPredicted RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 SPRED2Q7Z698 418 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 ZC3H3Q8IXZ2 948 aaKnown RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 EFCAB13Q8IY85 973 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 AOPEPQ8N6M6 819 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 PLEKHO2Q8TD55 490 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 SP7Q8TDD2 431 aaPredicted RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 CEP63Q96MT8 703 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 PPP1R10Q96QC0 940 aaKnown RBP12.9□□□□□ -0.34
CUX1-210ENST00000497815 FNBP1Q96RU3 617 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 ASB7Q9H672 318 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 CWH43Q9H720 699 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 NRDE2Q9H7Z3 1164 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 CEP290O15078 2479 aa12.9□□□□□ -0.34
CUX1-210ENST00000497815 PTPRJQ12913 1337 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 LRRIQ3A6PVS8 624 aaPredicted RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 NT5C1B-RDH14C9J2C7 533 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 FGFR1OPO95684 399 aaKnown RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 TRIM49P0CI25 452 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 TRIM49CP0CI26 452 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 DNAJB2P25686 324 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 OR1G1P47890 313 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 ZNF165P49910 485 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 VAMP7P51809 220 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 MYL5Q02045 173 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 TUSC3Q13454 348 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 SURF1Q15526 300 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 NAB2Q15742 525 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 LRIT3Q3SXY7 679 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 DCAF17Q5H9S7 520 aaPredicted RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 TCERG1LQ5VWI1 586 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 SPATA1Q5VX52 437 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 PPP2R2DQ66LE6 453 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 FOXR2Q6PJQ5 311 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 INTS8Q75QN2 995 aaKnown RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 FILIP1Q7Z7B0 1213 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 OR5B17Q8NGF7 314 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 ENOX1Q8TC92 643 aaKnown RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 RSPH1Q8WYR4 309 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 TIFAQ96CG3 184 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 CGRRF1Q99675 332 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 PAAF1Q9BRP4 392 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 C17orf80Q9BSJ5 609 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 MKNK1Q9BUB5 465 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 MMRN2Q9H8L6 949 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 CERS4Q9HA82 394 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 SLC28A3Q9HAS3 691 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 SLC38A7Q9NVC3 462 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 ARMCX3Q9UH62 379 aaPredicted RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 UBQLN1Q9UMX0 589 aaKnown RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 PRG3Q9Y2Y8 225 aaPredicted RBP12.89□□□□□ -0.35
CUX1-210ENST00000497815 NFE2L3Q9Y4A8 694 aa12.89□□□□□ -0.35
CUX1-210ENST00000497815 SOX1O00570 391 aaPredicted RBP12.88□□□□□ -0.35
CUX1-210ENST00000497815 MAPK13O15264 365 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 XPOTO43592 962 aaKnown RBP12.88□□□□□ -0.35
CUX1-210ENST00000497815 TMEM191BP0C7N4 346 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 LAG3P18627 525 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 CTNNB1P35222 781 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 SLC11A1P49279 550 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 CLCNKBP51801 687 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 BCAR1P56945 870 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 TAP1Q03518 808 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 DSC1Q08554 894 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 BFSP1Q12934 665 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 LRSAM1Q6UWE0 723 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 WDR49Q8IV35 697 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 COLGALT2Q8IYK4 626 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 COLGALT1Q8NBJ5 622 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 BEST2Q8NFU1 509 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 PARD3BQ8TEW8 1205 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 CACTINQ8WUQ7 758 aaKnown RBP12.88□□□□□ -0.35
CUX1-210ENST00000497815 CNOT6LQ96LI5 555 aaKnown RBP12.88□□□□□ -0.35
CUX1-210ENST00000497815 ZNF558Q96NG5 402 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 MTMR12Q9C0I1 747 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 TSPY26PQ9H489 355 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 SAMSN1Q9NSI8 373 aaKnown RBP12.88□□□□□ -0.35
CUX1-210ENST00000497815 INTS13Q9NVM9 706 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 FANCLQ9NW38 375 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 DPP3Q9NY33 737 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 DERAQ9Y315 318 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 C2CD2Q9Y426 696 aa12.88□□□□□ -0.35
CUX1-210ENST00000497815 FNDC1Q4ZHG4 1894 aaPredicted RBP12.88□□□□□ -0.35
CUX1-210ENST00000497815 GBF1Q92538 1859 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 F8W810 466 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 NRP1O14786 923 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 GNA14O95837 355 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 TNNC2P02585 160 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 ALDH2P05091 517 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms