RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 KNOP1Q1ED39 458 aaKnown RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.79□□□□□ -0.24e-19■□□□□ 8.4
VEGFA-215ENST00000497139 SMYD1Q8NB12 490 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 KRT35Q92764 455 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 SLC35C1Q96A29 364 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 VTI1AQ96AJ9 217 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 FGFBP2Q9BYJ0 223 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 SH3GLB1Q9Y371 365 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 POTEMA6NI47 508 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 IVDP26440 423 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 DYNLL1P63167 89 aaKnown RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 PHEXP78562 749 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 ARHGAP4P98171 946 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 THOC5Q13769 683 aaKnown RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 CYLC2Q14093 348 aaPredicted RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 KIF22Q14807 665 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 TMED2Q15363 201 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 SLC4A8Q2Y0W8 1093 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 SEPT14Q6ZU15 432 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 DTX3LQ8TDB6 740 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 MPP4Q96JB8 637 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 CFAP57Q96MR6 1250 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 DDX50Q9BQ39 737 aaKnown RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 ANKRD2Q9GZV1 360 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 TRABDQ9H4I3 376 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 DNAJC18Q9H819 358 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 DCP1AQ9NPI6 582 aaPredicted RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 TBK1Q9UHD2 729 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 MTO1Q9Y2Z2 717 aaKnown RBP13.79□□□□□ -0.2
VEGFA-215ENST00000497139 SPATA31A1Q5TZJ5 1347 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 SHANK3Q9BYB0 1731 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 A0A0J9YVX5 310 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 BIRC5O15392 142 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ZBED4O75132 1171 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 FKBP6O75344 327 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 RARBP10826 455 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ATF2P15336 505 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ZFXP17010 805 aaPredicted RBP13.78□□□□□ -0.2
VEGFA-215ENST00000497139 SERPINB3P29508 390 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 CCNFP41002 786 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 SERPINB8P50452 374 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ASPHQ12797 758 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ADRM1Q16186 407 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 AADACL2Q6P093 401 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 B3GNT6Q6ZMB0 384 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 SCYL3Q8IZE3 742 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 WDR60Q8WVS4 1066 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ZNF75CPQ92670 426 aaPredicted RBP13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ARL8BQ9NVJ2 186 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 RHBDL2Q9NX52 303 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ANAPC5Q9UJX4 755 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 FSCN2O14926 492 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 CIB2O75838 187 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 PYGMP11217 842 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 CETN2P41208 172 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 ITGA8P53708 1063 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 CDC16Q13042 620 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 DCAF17Q5H9S7 520 aaPredicted RBP13.78□□□□□ -0.2
VEGFA-215ENST00000497139 TMCO4Q5TGY1 634 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 AAGABQ6PD74 315 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 SYT2Q8N9I0 419 aaPredicted RBP13.78□□□□□ -0.2
VEGFA-215ENST00000497139 DIS3LQ8TF46 1054 aaKnown RBP13.78□□□□□ -0.2
VEGFA-215ENST00000497139 CLMNQ96JQ2 1002 aa13.78□□□□□ -0.2
VEGFA-215ENST00000497139 TGDSO95455 350 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 VIL1P09327 827 aaKnown RBP13.77□□□□□ -0.2
VEGFA-215ENST00000497139 SPATA31D3P0C874 917 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 PGM1P36871 562 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 GPC5P78333 572 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 CBX3Q13185 183 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 BMT2Q1RMZ1 405 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.77□□□□□ -0.2
VEGFA-215ENST00000497139 MAP3K21Q5TCX8 1036 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 SPATA31D4Q6ZUB0 917 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 PASD1Q8IV76 773 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 CCDC110Q8TBZ0 833 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 SH3RF3Q8TEJ3 882 aaPredicted RBP13.77□□□□□ -0.2
VEGFA-215ENST00000497139 SPOCK2Q92563 424 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 SKA1Q96BD8 255 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 NUDT12Q9BQG2 462 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 TRIM55Q9BYV6 548 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 TAS2R1Q9NYW7 299 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 WASF2Q9Y6W5 498 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 ABCA3Q99758 1704 aa13.77□□□□□ -0.2
VEGFA-215ENST00000497139 FOXO6A8MYZ6 492 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 RNASEH1O60930 286 aaKnown RBP13.77□□□□□ -0.21
VEGFA-215ENST00000497139 ESRRAP11474 423 aaPredicted RBP13.77□□□□□ -0.21
VEGFA-215ENST00000497139 IL2RBP14784 551 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 COMTP21964 271 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 MED21Q13503 144 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 TTLL12Q14166 644 aaPredicted RBP13.77□□□□□ -0.21
VEGFA-215ENST00000497139 DRAP1Q14919 205 aaPredicted RBP13.77□□□□□ -0.21
VEGFA-215ENST00000497139 TNIP1Q15025 636 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 HSP90AA5PQ58FG0 334 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 CFAP157Q5JU67 520 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 DYDC2Q96IM9 177 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 NAP1L4Q99733 375 aaKnown RBP13.77□□□□□ -0.21
VEGFA-215ENST00000497139 PHACTR1Q9C0D0 580 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 C17orf75Q9HAS0 396 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 NPHS2Q9NP85 383 aa13.77□□□□□ -0.21
VEGFA-215ENST00000497139 IL17RBQ9NRM6 502 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms