RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 PCMTD1Q96MG8 357 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 LSM14BQ9BX40 385 aaKnown RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 MTMR12Q9C0I1 747 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 INTS2Q9H0H0 1204 aaKnown RBP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 PLCB1Q9NQ66 1216 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 C1orf112Q9NSG2 853 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 IMPACTQ9P2X3 320 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 COQ4Q9Y3A0 265 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 C2CD2Q9Y426 696 aa12.33□□□□□ -0.44
MCF2L-231ENST00000494043 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.33□□□□□ -0.44
MCF2L-231ENST00000494043 ANK1P16157 1881 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 MEIS3P2A8K0S8 358 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 GOLGA6L6A8MZA4 724 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 TNNC2P02585 160 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 RAG1P15918 1043 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 SLC9A1P19634 815 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 ITGB8P26012 769 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 FAM189BP81408 668 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 BIRC3Q13489 604 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 FIGNQ5HY92 759 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 MFSD5Q6N075 450 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 DPY19L2P1Q6NXN4 242 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 TRIM65Q6PJ69 517 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 AGMOQ6ZNB7 445 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 SLC24A5Q71RS6 500 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 TRAPPC11Q7Z392 1133 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 DEFB128Q7Z7B8 93 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 ZNF598Q86UK7 904 aaKnown RBP12.32□□□□□ -0.44
MCF2L-231ENST00000494043 EHBP1Q8NDI1 1231 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 FBXL13Q8NEE6 735 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 LMO3Q8TAP4 145 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 TAS1R2Q8TE23 839 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 CACTINQ8WUQ7 758 aaKnown RBP12.32□□□□□ -0.44
MCF2L-231ENST00000494043 SEMA4DQ92854 862 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 LPPQ93052 612 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 PGBD4Q96DM1 585 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 VWCEQ96DN2 955 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 IQCDQ96DY2 449 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 KIF12Q96FN5 646 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 TSPAN18Q96SJ8 248 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 NUP58Q9BVL2 599 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 CXCL16Q9H2A7 254 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 FAM207AQ9NSI2 230 aaPredicted RBP12.32□□□□□ -0.44
MCF2L-231ENST00000494043 KLK14Q9P0G3 267 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 GIT1Q9Y2X7 761 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 SCN5AQ14524 2016 aa12.32□□□□□ -0.44
MCF2L-231ENST00000494043 ALPK3Q96L96 1907 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 SMIM28A0A1B0GU29 152 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 EPHB6O15197 1021 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 PHACTR2O75167 634 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 NOL4O94818 638 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 VNN1O95497 513 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 EOMESO95936 686 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 HLA-DRAP01903 254 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 GYPCP04921 128 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 ACTN1P12814 892 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 TRIM21P19474 475 aaKnown RBP12.31□□□□□ -0.44
MCF2L-231ENST00000494043 MLH1P40692 756 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 PIK3CAP42336 1068 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 ZBTB6Q15916 424 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 CNKSR3Q6P9H4 555 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 PPFIBP1Q86W92 1011 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 TMEM199Q8N511 208 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 C1orf127Q8N9H9 656 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 RNF169Q8NCN4 708 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 NEK11Q8NG66 645 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 ZMAT2Q96NC0 199 aaKnown RBP12.31□□□□□ -0.44
MCF2L-231ENST00000494043 TTYH3Q9C0H2 523 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 GANQ9H2C0 597 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 RSAD1Q9HA92 442 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 SIX2Q9NPC8 291 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 UBN1Q9NPG3 1134 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 RAB20Q9NX57 234 aa12.31□□□□□ -0.44
MCF2L-231ENST00000494043 CITO14578 2027 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 A0A1W2PQJ5 194 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 ARL5CA6NH57 179 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 ENPP3O14638 875 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 PTGESO14684 152 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 PTMAP06454 111 aaKnown RBP12.3□□□□□ -0.44
MCF2L-231ENST00000494043 TPM1P09493 284 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 IBSPP21815 317 aaPredicted RBP12.3□□□□□ -0.44
MCF2L-231ENST00000494043 DEKP35659 375 aaKnown RBP12.3□□□□□ -0.44
MCF2L-231ENST00000494043 GSDMDP57764 484 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 APBA1Q02410 837 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 NCOA4Q13772 614 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 GLRA4Q5JXX5 417 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 KLHDC7AQ5VTJ3 777 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 C7orf61Q8IZ16 206 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 BEST2Q8NFU1 509 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 ZFP42Q96MM3 310 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 RPS6KC1Q96S38 1066 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 GAD1Q99259 594 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 HTATIP2Q9BUP3 242 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 ELAC1Q9H777 363 aaKnown RBP12.3□□□□□ -0.44
MCF2L-231ENST00000494043 TMEM161AQ9NX61 479 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 DPP3Q9NY33 737 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 CEP72Q9P209 647 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 PRKAG2Q9UGJ0 569 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 SIX4Q9UIU6 781 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 FBXL5Q9UKA1 691 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms